MirGeneDB 3.0

MirGeneDB ID

Lhy-Mir-92-o105

Family name MIR-92 (all species)
Seed AUUGCAC
Species Laevipilina (Monoplacophora) (Laevipilina hyalina)
MiRBase ID
Paralogues Lhy-Mir-92-o103  Lhy-Mir-92-o104  Lhy-Mir-92-o106  Lhy-Mir-92-o107  Lhy-Mir-92-o108 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) L. hyalina
Node of Origin (family) Bilateria
Genome context
(Mono_atcgn_nospaces)
scaffold524705__9.6: 199-257 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGCUCCUGGAUUUGAUUGUAAUCUUCAUGGCGGUCGUGACUUGUGCAAUGCCGUUGUUAUUUAUAGGUAUUGCACUUGUCCCGGCCUAUAUGAGGCAGCAGUGCGUCGGCUCUACAAGC
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Structure
        10           20        30        40        50         
UGCUCCUGGAUUUGAUU---| AAU       GC     U   UU          GUUGUU 
                    GU   CUUCAUG  GGUCG GAC  GUGCAAUGCC      \
                    CG   GGAGUAU  CCGGC CUG  CACGUUAUGG      A
CGAACAUCUCGGCUGCGUGA^ AC-       AU     C   UU          AUAUUU 
       110       100         90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as oLhyans pending additional data.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Lhy-Mir-92-o105_5p* (predicted)

mirBase accessionNone
Sequence
0- CGGUCGUGACUUGUGCAAUGCC -22
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Mature sequence

Lhy-Mir-92-o105_3p

mirBase accessionNone
Sequence
37- UAUUGCACUUGUCCCGGCCUAU -59
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