MirGeneDB 3.0

MirGeneDB ID

Lhy-Mir-92-o106

Family name MIR-92 (all species)
Seed AUUGCAC
Species Laevipilina (Monoplacophora) (Laevipilina hyalina)
MiRBase ID
Paralogues Lhy-Mir-92-o103  Lhy-Mir-92-o104  Lhy-Mir-92-o105  Lhy-Mir-92-o107  Lhy-Mir-92-o108 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) L. hyalina
Node of Origin (family) Bilateria
Genome context
(Mono_atcgn_nospaces)
scaffold529593_49.1: 4739-4795 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUACGUGUGCCUACUCAGACUGUUUGUCGCAGGUUGUGACAGUUGCAAUCUUGUCUUUGAAUCAAAAUUGCACUCGUCCCGGCCUGCGGUAGGUUGUCGUGAUCGACGAUUCGAACA
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Structure
        10          20        30        40         50        
AUACGUGUGCCUACUCA--   UG   GU         U   -|  U     C  GUCUU 
                   GAC  UUU  CGCAGGUUG GAC AGU GCAAU UU     \
                   CUG  GGA  GCGUCCGGC CUG UCA CGUUA AA     U
ACAAGCUUAGCAGCUAGUG   UU   UG         C   C^  -     A  CUAAG 
     110       100        90        80         70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as oLhyans pending additional data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Lhy-Mir-92-o106_5p* (predicted)

mirBase accessionNone
Sequence
0- AGGUUGUGACAGUUGCAAUCUU -22
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Mature sequence

Lhy-Mir-92-o106_3p

mirBase accessionNone
Sequence
35- AAUUGCACUCGUCCCGGCCUGC -57
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