| MirGeneDB ID | Ofu-Mir-92-o142 |
|---|
| Family name |
MIR-92 (all species) |
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| Seed |
AUUGCAC |
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| Species |
Tubeworm (Owenia fusiformis) |
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| MiRBase ID |
|
|---|
| Paralogues |
Ofu-Mir-92-o141
Ofu-Mir-92-o143
Ofu-Mir-92-o144
Ofu-Mir-92-o145
Ofu-Mir-92-o146
Ofu-Mir-92-o147
Ofu-Mir-92-o148
Ofu-Mir-92-o149
|
|---|
| Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
|---|
| Node of Origin (locus) |
O. fusiformis
|
|---|
| Node of Origin (family) |
Bilateria
|
|---|
Genome context
(GCA_903813345.2_Owenia) |
CAIIXF020000007.1: 16098734-16098792 [-]
|
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Precursor
(pre-Mir +30nt flank) |
GAUAUAUCAUGAUACAGGUUGUAUUUCACUAGAUACGAGAUAUGUGCAAUAUUGUGUAUUGGAGCAACAUUGCACUUGUCUCGGUCUGCUGAAUGCAACCAAUCAACAUUAAACAAUGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GAUAUAUCAUGAUACAG---| U C A U A GUGUA
GUUGUAUU CA UAGAU CGAGAUA GUGCAAU UU U
CAACGUAA GU GUCUG GCUCUGU CACGUUA AA U
GGUAACAAAUUACAACUAAC^ - C - U C CGAGG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
|---|
| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Ofu-Mir-92-o142_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGAUACGAGAUAUGUGCAAUAUU -23
Get sequence
|
|---|
| Mature sequence |
Ofu-Mir-92-o142_3p |
| mirBase accession | None |
|---|
| Sequence |
37- CAUUGCACUUGUCUCGGUCUGC -59
Get sequence
|
|---|
