MirGeneDB 3.0
MirGeneDB ID

Ofu-Mir-92-o143

Family name MIR-92 (all species)
Seed AUUGCAC
Species Tubeworm (Owenia fusiformis)
MiRBase ID
Paralogues Ofu-Mir-92-o141  Ofu-Mir-92-o142  Ofu-Mir-92-o144  Ofu-Mir-92-o145  Ofu-Mir-92-o146  Ofu-Mir-92-o147  Ofu-Mir-92-o148  Ofu-Mir-92-o149 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) O. fusiformis
Node of Origin (family) Bilateria
Genome context
(GCA_903813345.2_Owenia)		 CAIIXF020000007.1: 16094923-16094980 [-]
Precursor
(pre-Mir +30nt flank)
AUCUGAUGUCAUUCUACUGUUAUUUUUAACAGGUCGUGUCCGGUGCAAAUUUGUGUUAGCCAAUCAAAUUGCACUUGUCCCGGCCUGCUAACUAUGACAUAAUCAAUGCAUUGUGACA
Get precursor sequence
Structure
        10          20        30        40        50         
AUCUGAUGUCAUUCUAC--|     UU   A       UGUCC       A    UGUUA 
                   UGUUAU  UUA CAGGUCG     GGUGCAA UUUG     \
                   ACAGUA  AAU GUCCGGC     UCACGUU AAAC     G
ACAGUGUUACGUAACUAAU^     UC   C       CCUGU       -    UAACC 
      110       100        90        80        70         60
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
To To
Star sequence

Ofu-Mir-92-o143_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGGUCGUGUCCGGUGCAAAUUUG -23
Get sequence
Mature sequence

Ofu-Mir-92-o143_3p
mirBase accessionNone
Sequence 
36- AAUUGCACUUGUCCCGGCCUGC -58
Get sequence