| MirGeneDB ID | Ofu-Mir-92-o146 |
|---|
| Family name |
MIR-92 (all species) |
|---|
| Seed |
AUUGCAC |
|---|
| Species |
Tubeworm (Owenia fusiformis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Ofu-Mir-92-o141
Ofu-Mir-92-o142
Ofu-Mir-92-o143
Ofu-Mir-92-o144
Ofu-Mir-92-o145
Ofu-Mir-92-o147
Ofu-Mir-92-o148
Ofu-Mir-92-o149
|
|---|
| Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
|---|
| Node of Origin (locus) |
O. fusiformis
|
|---|
| Node of Origin (family) |
Bilateria
|
|---|
Genome context
(GCA_903813345.2_Owenia) |
CAIIXF020000007.1: 16092897-16092953 [-]
|
|---|
Precursor
(pre-Mir +30nt flank) |
GUCGUUAUGGUGACACAAAAGGGGUACUGUCGGUCGUGACUUUUGCAAUAUGUUGUUGUGAACCAGAUUGCACUUGUCCCGGCCUGCUUUAGUCCGAAUAUUCUACAAUAGGUGUCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUCGUUAUGGUGACACAAAA--| G CU C U UUU A UUGUU
GGG UA GU GGUCG GAC UGCAAU UG \
CCU AU CG CCGGC CUG ACGUUA AC G
CCUGUGGAUAACAUCUUAUAAG^ G UU U C UUC G CAAGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Ofu-Mir-92-o146_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CGGUCGUGACUUUUGCAAUAUG -22
Get sequence
|
|---|
| Mature sequence |
Ofu-Mir-92-o146_3p |
| mirBase accession | None |
|---|
| Sequence |
35- GAUUGCACUUGUCCCGGCCUGC -57
Get sequence
|
|---|
