| MirGeneDB ID | Ofu-Mir-92-o147 |
|---|
| Family name |
MIR-92 (all species) |
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| Seed |
AUUGCAC |
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| Species |
Tubeworm (Owenia fusiformis) |
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| MiRBase ID |
|
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| Paralogues |
Ofu-Mir-92-o141
Ofu-Mir-92-o142
Ofu-Mir-92-o143
Ofu-Mir-92-o144
Ofu-Mir-92-o145
Ofu-Mir-92-o146
Ofu-Mir-92-o148
Ofu-Mir-92-o149
|
|---|
| Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
|---|
| Node of Origin (locus) |
O. fusiformis
|
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| Node of Origin (family) |
Bilateria
|
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Genome context
(GCA_903813345.2_Owenia) |
CAIIXF020000005.1: 11520986-11521044 [+]
|
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Precursor
(pre-Mir +30nt flank) |
CUAAGAACUGAAUGUAUUACUGUUACUGCUAGGACGGAAAAUGUGCAAUCUUUGUGUUAUAUGCUAAAAUUGCACAUAUCCCGGCCUUACAGUAGCAGUCUUUACAACAUUUCAACAUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUAAGAACUGAAUGUAUU--| CU A AAA C UGUGUU
ACUGUUACUG AGG CGG AUGUGCAAU UU \
UGACGAUGAC UCC GCC UACACGUUA AA A
UUACAACUUUACAACAUUUC^ AU G CUA A UCGUAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Ofu-Mir-92-o147_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGGACGGAAAAUGUGCAAUCUU -22
Get sequence
|
|---|
| Mature sequence |
Ofu-Mir-92-o147_3p |
| mirBase accession | None |
|---|
| Sequence |
37- AAUUGCACAUAUCCCGGCCUUA -59
Get sequence
|
|---|
