MirGeneDB ID | Ebu-Mir-92-P2f |
Family name |
MIR-92 (all species) |
Seed |
AUUGCAC |
Species |
Inshore hagfish (Eptatretus burgeri) |
MiRBase ID |
|
Paralogues |
Ebu-Mir-92-P1e
Ebu-Mir-92-P2e
|
Orthologues |
Asu-Mir-92
Bfl-Mir-92-o2
Bla-Mir-92-o2
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
Node of Origin (locus) |
E. burgeri
|
Node of Origin (family) |
Bilateria
|
Genome context (Eburgeri_3) |
FYBX02010282.1: 2176594-2176651 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGAUGAUUCAGAGUUCAGGCCAACUCUGACAGGCUGAGCCCUGUGCAAACGCUUGUUUUAUUCCAGCAUUGCACUAGUCUCGGUCUGUCUGUGAUGGCUUGCCGCUUCAGUGGCUACC
Get precursor sequence
|
Structure | 10 20 30 40 50
AGAUGAUUCAGAGUUCA--| ACUCU CCCU AC UGUUU
GGCCA GACAGGCUGAG GUGCAA GCU \
UCGGU CUGUCUGGCUC CACGUU CGA U
CCAUCGGUGACUUCGCCGU^ AGUGU UGAU A- CCUUA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Ebu-Mir-92-P2f_5p* |
mirBase accession | None |
Sequence |
0- AGGCUGAGCCCUGUGCAAACGCU -23
Get sequence
|
Mature sequence |
Ebu-Mir-92-P2f_3p |
mirBase accession | None |
Sequence |
36- CAUUGCACUAGUCUCGGUCUGU -58
Get sequence
|