MirGeneDB ID | Ebu-Mir-92-P1e |
Family name |
MIR-92 (all species) |
Seed |
AUUGCAC |
Species |
Inshore hagfish (Eptatretus burgeri) |
MiRBase ID |
|
Paralogues |
Ebu-Mir-92-P2e
Ebu-Mir-92-P2f
|
Orthologues |
Asu-Mir-92
Bfl-Mir-92-o1
Bla-Mir-92-o1
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
Node of Origin (locus) |
E. burgeri
|
Node of Origin (family) |
Bilateria
|
Genome context (Eburgeri_3) |
FYBX02010694.1: 1553862-1553920 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGGGUUCUUGGUUGAUGUCCCGCCCUGCUAAGGCCUGGAUUGGCUGCAAUGCAUGUGUGUUCAUUUGUAUUGCACUUGUCCCGGCCUCUGUGGGGGUGUUGGGAACUUUCCCACAUCCC
Get precursor sequence
|
Structure | 10 20 30 40 50
GGGGUUCUUGGUUGAUGUCCCG--| UG UA U U C UGUGU
CCC C AGGCC GGAU GG UGCAAUGCA G
GGG G UCCGG CCUG UC ACGUUAUGU U
CCCUACACCCUUUCAAGGGUUGUG^ GU UC C U - UUACU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
|
|
Star sequence |
Ebu-Mir-92-P1e_5p* (predicted) |
mirBase accession | None |
Sequence |
0- AGGCCUGGAUUGGCUGCAAUGCA -23
Get sequence
|
Mature sequence |
Ebu-Mir-92-P1e_3p |
mirBase accession | None |
Sequence |
37- UAUUGCACUUGUCCCGGCCUCU -59
Get sequence
|