| MirGeneDB ID | Pmi-Mir-92-o26 |
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| Family name |
MIR-92 (all species) |
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| Seed |
AUUGCAC |
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| Species |
Bat starfish (Patiria miniata) |
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| MiRBase ID |
|
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| Paralogues |
Pmi-Mir-92-o21
Pmi-Mir-92-o22
Pmi-Mir-92-o23
Pmi-Mir-92-o24
Pmi-Mir-92-o25
Pmi-Mir-92-o27
|
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| Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
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| Node of Origin (locus) |
P. miniata
|
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| Node of Origin (family) |
Bilateria
|
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Genome context
(Pmin1) |
JH769491.1: 32701-32762 [+]
|
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Precursor
(pre-Mir +30nt flank) |
GAAGUUGUCAUCAAUAUGAUUACUGUGCAGAGGUCAGGGAUAGUGUAAUGCUGUGUCAUAUCAUUGCUAGUAUUGCACUCCCCCCGGCCUUUGCAAAGUGGUCCGUCCUUCGUGUGGAUGCC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GAAGUUGUCAUCAAUAU--| G A AU GUGUCAU
GAUUACU UGCAGAGGUC GGG AGUGUAAUGCU A
CUGGUGA ACGUUUCCGG CCC UCACGUUAUGA U
CCGUAGGUGUGCUUCCUGC^ A C CC UCGUUAC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data. |
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Pmi-Mir-92-o26_5p* |
| mirBase accession | None |
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| Sequence |
0- AGGUCAGGGAUAGUGUAAUGCU -22
Get sequence
|
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| Mature sequence |
Pmi-Mir-92-o26_3p |
| mirBase accession | None |
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| Sequence |
40- UAUUGCACUCCCCCCGGCCUUU -62
Get sequence
|
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