MirGeneDB 3.0

MirGeneDB ID

Pmi-Mir-92-o24

Family name MIR-92 (all species)
Seed AUUGCAC
Species Bat starfish (Patiria miniata)
MiRBase ID pmi-mir-92d
Paralogues Pmi-Mir-92-o21  Pmi-Mir-92-o22  Pmi-Mir-92-o23  Pmi-Mir-92-o25  Pmi-Mir-92-o26  Pmi-Mir-92-o27 
Orthologues Asu-Mir-92  Ava-Mir-92-P24  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) P. miniata
Node of Origin (family) Bilateria
Genome context
(Pmin1)
JH772232.1: 11031-11096 [-]
Clustered miRNAs
(< 50kb from Mir-92-o24)
Mir-92-o25 JH772232.1: 9421-9483 [-]
Mir-92-o24 JH772232.1: 11031-11096 [-]
Mir-92-o23 JH772232.1: 11838-11900 [-]
Mir-92-o22 JH772232.1: 12795-12854 [-]
Precursor
(pre-Mir +30nt flank)
AGUCCGUCGUUCAUUGGCGCAGUGUUGUUUAGGUCGUGACGUGUACAAUGUUGUGAUUUACGCCCUAAGUCCAAUAUUGCACUCGUCCCGGCCUAGAGAACACGGCCCGAUCGUCAUACGAAUUGC
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Structure
        10          20        30        40        50        60  
AGUCCGUCGUUCAUUGGC--| A     G         U    U  A       GUGAUUUAC 
                    GC GUGUU UUUAGGUCG GACG GU CAAUGUU         G
                    CG CACAA AGAUCCGGC CUGC CA GUUAUAA         C
CGUUAAGCAUACUGCUAGCC^ G     G         C    U  C       CCUGAAUCC 
    120       110       100        90        80        70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
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Star sequence

Pmi-Mir-92-o24_5p*

mirBase accessionNone
Sequence
0- AGGUCGUGACGUGUACAAUGUU -22
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Mature sequence

Pmi-Mir-92-o24_3p

mirBase accessionMIMAT0032154
Sequence
44- UAUUGCACUCGUCCCGGCCUAG -66
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