MirGeneDB 3.0

MirGeneDB ID

Pmi-Mir-92-o21

Family name MIR-92 (all species)
Seed AUUGCAC
Species Bat starfish (Patiria miniata)
MiRBase ID
Paralogues Pmi-Mir-92-o22  Pmi-Mir-92-o23  Pmi-Mir-92-o24  Pmi-Mir-92-o25  Pmi-Mir-92-o26  Pmi-Mir-92-o27 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92  Tur-Mir-92-P21 
Node of Origin (locus) P. miniata
Node of Origin (family) Bilateria
Genome context
(Pmin1)
JH772232.1: 21466-21523 [-]
Clustered miRNAs
(< 50kb from Mir-92-o21)
Mir-92-o25 JH772232.1: 9421-9483 [-]
Mir-92-o24 JH772232.1: 11031-11096 [-]
Mir-92-o23 JH772232.1: 11838-11900 [-]
Mir-92-o22 JH772232.1: 12795-12854 [-]
Precursor
(pre-Mir +30nt flank)
UUCAUCCUCAGUGAGAUCUGGUCAGCAGUCAGAUGGAGAUGUUUUGCAAUUGUCUUGAAGAGUCGACAUUGCACUCAUCUCGGUCUGAUUGUGCAGAAUCCUAACACCGAUGCGAAUC
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Structure
        10             20        30        40        50         
UUCAUCCUCAGUGAGAU-----|  GUCA          G      UUU      U  CUUGA 
                      CUG    GCAGUCAGAU GAGAUG   UGCAAU GU     A
                      GAC    UGUUAGUCUG CUCUAC   ACGUUA CA     G
CUAAGCGUAGCCACAAUCCUAA^  G---          G      UC-      -  GCUGA 
      110       100           90        80         70         60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Star sequence

Pmi-Mir-92-o21_5p* (predicted)

mirBase accessionNone
Sequence
0- AGAUGGAGAUGUUUUGCAAUUGU -23
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Mature sequence

Pmi-Mir-92-o21_3p

mirBase accessionNone
Sequence
36- CAUUGCACUCAUCUCGGUCUGA -58
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