| MirGeneDB ID | Hru-Mir-92-o95 |
|---|
| Family name |
MIR-92 (all species) |
|---|
| Seed |
AUUGCAC |
|---|
| Species |
Red Abalone (Haliotis rufescens) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Hru-Mir-92-o92
Hru-Mir-92-o93
Hru-Mir-92-o94
|
|---|
| Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
|---|
| Node of Origin (locus) |
H. rufescens
|
|---|
| Node of Origin (family) |
Bilateria
|
|---|
Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces) |
JALGQA010000014.1: 5919490-5919546 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CUGCCCUGGUUGCUGUGUGUGUAGGUGUCUAGGUCGUGAUGUUUGCAAUAUUUGUUCCUUGAUCAAAUUGCACUCGUCCCGGCCUGCAGAACUACCAUCUGUCAUCACCAGGCUUUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUGCCCUGGUUGCUGUG---| U GUGUC U UU AU UUCC
UG GUAG UAGGUCG GAUG UGCAAU UUG \
AC CAUC GUCCGGC CUGC ACGUUA AAC U
UUUUCGGACCACUACUGUCU^ - AAGAC C UC -- UAGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Hru-Mir-92-o95_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGGUCGUGAUGUUUGCAAUAUUUGU -25
Get sequence
|
|---|
| Mature sequence |
Hru-Mir-92-o95_3p |
| mirBase accession | None |
|---|
| Sequence |
35- AAUUGCACUCGUCCCGGCCUGC -57
Get sequence
|
|---|
