| MirGeneDB ID | Hru-Mir-92-o93 |
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| Family name |
MIR-92 (all species) |
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| Seed |
AUUGCAC |
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| Species |
Red Abalone (Haliotis rufescens) |
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| MiRBase ID |
|
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| Paralogues |
Hru-Mir-92-o92
Hru-Mir-92-o94
Hru-Mir-92-o95
|
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| Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
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| Node of Origin (locus) |
H. rufescens
|
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| Node of Origin (family) |
Bilateria
|
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Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces) |
JALGQA010000014.1: 5912798-5912858 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GAUCCUGCUGGCUGGCAGAGGGACACGGGCAGGUCGUGAUUUGCGCAAUCCUUGGUUGAUACAGAUUCCAAUUGCACUUGUCCCGGCCUGCUUGUGACACCCCACCACAUCCCCAGCACAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GAUCCUGCUGGCUGGCAGA A---| U UUGC CCU UUGAU
GGG CACGGGCAGGUCG GAU GCAAU UGG A
CCC GUGUUCGUCCGGC CUG CGUUA ACC C
CACACGACCCCUACACCA- CACA^ C UUCA --- UUAGA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Hru-Mir-92-o93_5p* |
| mirBase accession | None |
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| Sequence |
0- AGGUCGUGAUUUGCGCAAUCCUUGG -25
Get sequence
|
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| Mature sequence |
Hru-Mir-92-o93_3p |
| mirBase accession | None |
|---|
| Sequence |
39- AAUUGCACUUGUCCCGGCCUGC -61
Get sequence
|
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