MirGeneDB 3.0

MirGeneDB ID

Hru-Mir-92-o94

Family name MIR-92 (all species)
Seed AUUGCAC
Species Red Abalone (Haliotis rufescens)
MiRBase ID
Paralogues Hru-Mir-92-o92  Hru-Mir-92-o93  Hru-Mir-92-o95 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) H. rufescens
Node of Origin (family) Bilateria
Genome context
(GCA_023055435.1_xgHalRufe1.0.p_genomic_plus_traces)
JALGQA010000014.1: 5917110-5917167 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGAGAUGGACAAGUUUGUGUGUUGAGAGACAGGUGUGACCUGUGCAAUAUUUUGUUUUGAAACAAAUUGCACUGGUCCCGGCCUGCCUCUCAAGACACCCAGCGACUGAACACGGCG
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Structure
        10          20        30         40        50        
CAGAGAUGGACAAGUUU--    G       A    -| U    U       AUUUUGUU 
                   GUGU UUGAGAG CAGG UG GACC GUGCAAU        \
                   CACA AACUCUC GUCC GC CUGG CACGUUA        U
GCGGCACAAGUCAGCGACC    G       C    G^ C    U       AACAAAGU 
      110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
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Star sequence

Hru-Mir-92-o94_5p* (predicted)

mirBase accessionNone
Sequence
0- CAGGUGUGACCUGUGCAAUAUUUU -24
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Mature sequence

Hru-Mir-92-o94_3p

mirBase accessionNone
Sequence
35- AAUUGCACUGGUCCCGGCCUGCC -58
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