MirGeneDB ID | Pcr-Mir-92-o150 |
Family name |
MIR-92 (all species) |
Seed |
AUUGCAC |
Species |
Tiger flatworm (Prostheceraeus crozieri ) |
MiRBase ID |
|
Paralogues |
Pcr-Mir-92-o151
|
Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
Node of Origin (locus) |
P. crozeri
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_907163375.1_PROCRO_GENOME_genomic) |
CAJQUW010002215.1: 1306425-1306484 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUUUCUGAUGUCACGCAUUUCCAUGUGAUGAGGUGCAAAUUGAGUGCAAUUCUUUUGAUAUCCGACAAGAUUGCACUCUUUUUGGCCUAAUCGUCAUGGUUGGAGCACCGAAGAUACGAU
Get precursor sequence
|
Structure | 10 20 30 40 50
CUUUCUGAUGUCACGCAUUU- -| G G UU CUUUUGAU
CCAUG UGAU AGGU CAAA GAGUGCAAUU \
GGUAC GCUA UCCG GUUU CUCACGUUAG A
UAGCAUAGAAGCCACGAGGUU U^ A - UU AACAGCCU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Pcr-Mir-92-o150_5p* |
mirBase accession | None |
Sequence |
0- AGGUGCAAAUUGAGUGCAAUUCU -23
Get sequence
|
Mature sequence |
Pcr-Mir-92-o150_3p |
mirBase accession | None |
Sequence |
38- GAUUGCACUCUUUUUGGCCUAA -60
Get sequence
|