MirGeneDB 3.0

MirGeneDB ID

Pcr-Mir-92-o150

Family name MIR-92 (all species)
Seed AUUGCAC
Species Tiger flatworm (Prostheceraeus crozieri )
MiRBase ID
Paralogues Pcr-Mir-92-o151 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) P. crozeri
Node of Origin (family) Bilateria
Genome context
(GCA_907163375.1_PROCRO_GENOME_genomic)
CAJQUW010002215.1: 1306425-1306484 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CUUUCUGAUGUCACGCAUUUCCAUGUGAUGAGGUGCAAAUUGAGUGCAAUUCUUUUGAUAUCCGACAAGAUUGCACUCUUUUUGGCCUAAUCGUCAUGGUUGGAGCACCGAAGAUACGAU
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Structure
        10        20          30        40        50          
CUUUCUGAUGUCACGCAUUU-     -|   G    G    UU          CUUUUGAU 
                     CCAUG UGAU AGGU CAAA  GAGUGCAAUU        \
                     GGUAC GCUA UCCG GUUU  CUCACGUUAG        A
UAGCAUAGAAGCCACGAGGUU     U^   A    -    UU          AACAGCCU 
.       110       100        90         80        70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Pcr-Mir-92-o150_5p*

mirBase accessionNone
Sequence
0- AGGUGCAAAUUGAGUGCAAUUCU -23
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Mature sequence

Pcr-Mir-92-o150_3p

mirBase accessionNone
Sequence
38- GAUUGCACUCUUUUUGGCCUAA -60
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