MirGeneDB 3.0

MirGeneDB ID

Gpa-Mir-92-o62

Family name MIR-92 (all species)
Seed AUUGCAC
Species Tsetse fly (Glossina pallidipes)
MiRBase ID
Paralogues Gpa-Mir-92-P3  Gpa-Mir-92-P4 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) G. pallidipes
Node of Origin (family) Bilateria
Genome context
(GpalI1)
Scaffold35: 40492-40554 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GACACAGUAAAGAGAAGCAUGUUUAUUUGAAGGCCGUGGCUUGUUGCAAUUAUGUGUUAAUGGAAAAAACAUAUUGCACAAUCCCCGGCCUGUAAAUGAAAUUGCGAACAACGUAAAGAAAAA
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Structure
        10          20        30        40        50        60  
GACACAGUAAAGAGAAG--| UG        A      U  C    U     U   UGUUAAU 
                   CA  UUUAUUUG AGGCCG GG UUGU GCAAU AUG       \
                   GU  AAGUAAAU UCCGGC CC AACA CGUUA UAC       G
AAAAAGAAAUGCAACAAGC^ UA        G      C  U    -     -   AAAAAAG 
 120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
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Star sequence

Gpa-Mir-92-o62_5p*

mirBase accessionNone
Sequence
0- AGGCCGUGGCUUGUUGCAAUUAUG -24
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Mature sequence

Gpa-Mir-92-o62_3p

mirBase accessionNone
Sequence
41- UAUUGCACAAUCCCCGGCCUGU -63
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