MirGeneDB 3.0

MirGeneDB ID

Sma-Mir-92-o132

Family name MIR-92 (all species)
Seed AUUGCAC
Species Blood fluke (Schistosoma mansoni)
MiRBase ID
Paralogues Sma-Mir-92-o133 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) S. mansoni
Node of Origin (family) Bilateria
Genome context
(GCA_000237925.5_SM_V9_genomic)
HE601624.3: 60358613-60358707 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUGUUUCUAAAUUACUGUUCAUUUACCGGAGGCUGUGUGUGGAGCAAACUGAACUGCCUGAGCUGAUUUUACAUCCAGUUCAGGUGUUAAUGUAAUUUUACAGAUUGCACUACUCAUAGCCUUCGCUAGAACGGCUGAACAUCUAUGUUUAUUA
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Structure
        10             20        30        40        50        60        70       
UCUGUUUCUAAAUUACU-----|   AUU  C           U    A    A   AACUGCCUGAGCUGAUUUUACAUC 
                      GUUC   UA CGGAGGCUGUG GUGG GCAA CUG                        \
                      CAAG   AU GCUUCCGAUAC CAUC CGUU GAC                        C
AUUAUUUGUAUCUACAAGUCGG^   ---  C           U    A    A   AUUUUAAUGUAAUUGUGGACUUGA 
   150       140       130          120       110       100        90        80
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
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Star sequence

Sma-Mir-92-o132_5p*

mirBase accessionNone
Sequence
0- AGGCUGUGUGUGGAGCAAACUG -22
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Mature sequence

Sma-Mir-92-o132_3p

mirBase accessionNone
Sequence
73- GAUUGCACUACUCAUAGCCUUC -95
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