| MirGeneDB ID | Sma-Mir-92-o133 |
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| Family name |
MIR-92 (all species) |
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| Seed |
AUUGCAC |
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| Species |
Blood fluke (Schistosoma mansoni) |
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| MiRBase ID |
sma-mir-3479
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| Paralogues |
Sma-Mir-92-o132
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| Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
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| Node of Origin (locus) |
S. mansoni
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| Node of Origin (family) |
Bilateria
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Genome context
(GCA_000237925.5_SM_V9_genomic) |
HE601627.3: 8894058-8894113 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAACAGUUUGUGUUGUGGUCCAUGUUUGUGAGGGGGAUGUUUGUGCAAUUUAGUGUUGUAAAUAUAUUGCACUAACCUUCGCCUUGAGGGGGAUGUUUGUGCAAUUUAGUGUUGUAAAUAUAUUGCACUAACCUUCGCCUUGCAAAUAUAGGGUGAACAUCUCCUACUUAUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AAACAGUUUGUGUUGUGG- -| UGAGGGGGAUGUUUGUGCAAUUUAGUGU
UCC AUGUUUG U
GGG UAUAAAC G
UUAUUCAUCCUCUACAAGU A^ GUUCCGCUUCCAAUCACGUUAUAUAAAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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Ce |
Ce |
Ce |
Eg |
Eg |
Eg |
Eg |
Eg |
Eg |
Mi |
Mi |
Sc |
Sc |
Sc |
Sm |
Sm |
Sp |
Sp |
Sp |
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| Mature sequence |
Sma-Mir-92-o133_5p |
| mirBase accession | MIMAT0025039 |
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| Sequence |
34- UAUUGCACUAACCUUCGCCUUG -56
Get sequence
|
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| Star sequence |
Sma-Mir-92-o133_3p* |
| mirBase accession | MIMAT0025039 |
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| Sequence |
0- AGGGGGAUGUUUGUGCAAUUUA -22
Get sequence
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