MirGeneDB 3.0

MirGeneDB ID

Egr-Mir-92-o135

Family name MIR-92 (all species)
Seed AUUGCAC
Species Hydatid worm (Echinococcus granulosus)
MiRBase ID egr-mir-3479b
Paralogues Egr-Mir-92-o134 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) E. granulosus
Node of Origin (family) Bilateria
Genome context
(GCA_000524195.1_ASM52419v1_Egranulosus)
APAU02000015.1: 733486-733553 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACUUUUUCCUUCGAUUUACGGUCGCUGUGGUGGCGGUGCGCGGCGCAAUUUCUGUUAACCCGCUCUCUUGGGUGCAGAUUGCACUACCCAUCGCCCACACAACAUCCGCAAAACAUCUGAGAUUCAUG
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Structure
        10          20        30        40        50        60    
ACUUUUUCCUUCGAUUUA--|  UCGC    GU       CGC  C    UU    UUAACCCGC 
                    CGG    UGUG  GGCGGUG   GG GCAA  UCUG         U
                    GCC    ACAC  CCGCUAC   UC CGUU  AGAC         C
GUACUUAGAGUCUACAAAAC^  UACA    AC       CCA  A    --    GUGGGUUCU 
      120       110       100        90        80          70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Eg Eg Ev Ev Ad Fe Fe Hy Hy Hy Li Li Li Mi Mi Mi Po Po Po Po Po Po Po Pr Pr Pr Sm
Star sequence

Egr-Mir-92-o135_5p*

mirBase accessionMIMAT0041730
Sequence
0- UGGCGGUGCGCGGCGCAAUUUCUG -24
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Mature sequence

Egr-Mir-92-o135_3p

mirBase accessionMIMAT0041731
Sequence
46- GAUUGCACUACCCAUCGCCCAC -68
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