| MirGeneDB ID | Pca-Mir-92-o96 |
|---|
| Family name |
MIR-92 (all species) |
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| Seed |
AUUGCAC |
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| Species |
Penis worm (Priapulus caudatus) |
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| MiRBase ID |
|
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| Paralogues |
Pca-Mir-92-o97
|
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| Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
|---|
| Node of Origin (locus) |
P. caudatus
|
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| Node of Origin (family) |
Bilateria
|
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Genome context
(Priapulus_caudatus_gca000485595v2) |
KQ716014.1: 7152-7210 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CACGAUUGGUGAUAACUUUCGAGGCUGUGUAGGUCGGUACUUGUGCCAAUUUGUUUUCAGCUGUUCAAAUUGCACUCGUCCCGGCCUGUUCAAUCCUCAAUGUUGCAGCGUGCAUCAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CACGAUUGGUGAUAACUUUC- C-| UG U UU C UUUUC
GAGG UG UAGGUCGG AC GUGC AAUUUG A
CUCC AC GUCCGGCC UG CACG UUAAAC G
AGACUACGUGCGACGUUGUAA UA^ UU C CU - UUGUC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Pca-Mir-92-o96_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGGUCGGUACUUGUGCCAAUUUG -23
Get sequence
|
|---|
| Mature sequence |
Pca-Mir-92-o96_3p |
| mirBase accession | None |
|---|
| Sequence |
37- AAUUGCACUCGUCCCGGCCUGU -59
Get sequence
|
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