MirGeneDB ID | Pca-Mir-92-o97 |
Family name |
MIR-92 (all species) |
Seed |
AUUGCAC |
Species |
Penis worm (Priapulus caudatus) |
MiRBase ID |
|
Paralogues |
Pca-Mir-92-o96
|
Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
Node of Origin (locus) |
P. caudatus
|
Node of Origin (family) |
Bilateria
|
Genome context (Priapulus_caudatus_gca000485595v2) |
KQ716181.1: 38405-38465 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUGCCUGCCACUCGGCUGUUUGGUGUGAAGAGGUCUGAAUGAAGUGACAAUAUUGCACAUGUUAUGGAAUAUUGCACUCGUCCCGGCCUUUUUACAACAGCAAAAACUCUUCCGUCAGCUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CUGCCUGCCACUCGGCU---| UGG UGA A A GCACAU
GUU UGUGAAGAGGUC AUGA GUG CAAUAUU \
CGA ACAUUUUUCCGG UGCU CAC GUUAUAA G
GUCGACUGCCUUCUCAAAAA^ CA- CCC - - GGUAUU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Pca-Mir-92-o97_5p* |
mirBase accession | None |
Sequence |
0- AGGUCUGAAUGAAGUGACAAUAUU -24
Get sequence
|
Mature sequence |
Pca-Mir-92-o97_3p |
mirBase accession | None |
Sequence |
39- UAUUGCACUCGUCCCGGCCUUU -61
Get sequence
|