| MirGeneDB ID | Pca-Mir-92-o97 |
|---|
| Family name |
MIR-92 (all species) |
|---|
| Seed |
AUUGCAC |
|---|
| Species |
Penis worm (Priapulus caudatus) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Pca-Mir-92-o96
|
|---|
| Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
|
|---|
| Node of Origin (locus) |
P. caudatus
|
|---|
| Node of Origin (family) |
Bilateria
|
|---|
Genome context
(Priapulus_caudatus_gca000485595v2) |
KQ716181.1: 38405-38465 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CUGCCUGCCACUCGGCUGUUUGGUGUGAAGAGGUCUGAAUGAAGUGACAAUAUUGCACAUGUUAUGGAAUAUUGCACUCGUCCCGGCCUUUAGGUCUGAAUGAAGUGACAAUAUUGCACAUGUUAUGGAAUAUUGCACUCGUCCCGGCCUUUUUACAACAGCAAAAACUCUUCCGUCAGCUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CUGCCUGCCACUCGGCUGU| G GAAGAGGUCUGAAUGAAGUGACAAUAUUGCACAU
UUG UGU G
AAC ACA U
GUCGACUGCCUUCUCAAA-^ G ACAUUUUUCCGGCCCUGCUCACGUUAUAAGGUAU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Pca-Mir-92-o97_5p |
| mirBase accession | None |
|---|
| Sequence |
39- UAUUGCACUCGUCCCGGCCUUU -61
Get sequence
|
|---|
| Star sequence |
Pca-Mir-92-o97_3p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGGUCUGAAUGAAGUGACAAUAUU -24
Get sequence
|
|---|
