MirGeneDB 3.0

MirGeneDB ID

Pca-Mir-92-o97

Family name MIR-92 (all species)
Seed AUUGCAC
Species Penis worm (Priapulus caudatus)
MiRBase ID
Paralogues Pca-Mir-92-o96 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) P. caudatus
Node of Origin (family) Bilateria
Genome context
(Priapulus_caudatus_gca000485595v2)
KQ716181.1: 38405-38465 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGCCUGCCACUCGGCUGUUUGGUGUGAAGAGGUCUGAAUGAAGUGACAAUAUUGCACAUGUUAUGGAAUAUUGCACUCGUCCCGGCCUUUUUACAACAGCAAAAACUCUUCCGUCAGCUG
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Structure
        10           20        30        40        50        60 
CUGCCUGCCACUCGGCU---|  UGG            UGA    A   A       GCACAU 
                    GUU   UGUGAAGAGGUC   AUGA GUG CAAUAUU      \
                    CGA   ACAUUUUUCCGG   UGCU CAC GUUAUAA      G
GUCGACUGCCUUCUCAAAAA^  CA-            CCC    -   -       GGUAUU 
 .       110       100         90        80          70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Gi In To
Star sequence

Pca-Mir-92-o97_5p*

mirBase accessionNone
Sequence
0- AGGUCUGAAUGAAGUGACAAUAUU -24
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Mature sequence

Pca-Mir-92-o97_3p

mirBase accessionNone
Sequence
39- UAUUGCACUCGUCCCGGCCUUU -61
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