MirGeneDB 3.0
MirGeneDB ID

Lan-Mir-92-o85

Family name MIR-92 (all species)
Seed AUUGCAC
Species Lingula (Lingula anatina)
MiRBase ID
Paralogues Lan-Mir-92-o79a  Lan-Mir-92-o79b  Lan-Mir-92-o80a  Lan-Mir-92-o80b  Lan-Mir-92-o81  Lan-Mir-92-o82  Lan-Mir-92-o83  Lan-Mir-92-o84 
Orthologues Asu-Mir-92  Cel-Mir-92  Esc-Mir-92  Gsp-Mir-92  Hmi-Mir-92  Isc-Mir-92  Obi-Mir-92  Sme-Mir-92 
Node of Origin (locus) L. anatina
Node of Origin (family) Bilateria
Genome context
(LinAna_1.0)		 LFEI01000686: 142810-142869 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAUUUGCCACACUGUCCUGUAUACUUGAGCAGGUCUUGAUGCGUGCAAUUUUGUUUUUUUUUAAAGCAAAUUGCACGCGUCCCGGCCUACUUGAAUAACCAUUAACAGCAGAGCUUUGAC
Get precursor sequence
Structure
        10          20        30        40        50          
CAUUUGCCACACUGUCC--| UA  C UG  C     UU              U  UUUUU 
                   UG  UA U  AG AGGUC  GAUGCGUGCAAUUU GU     \
                   AC  AU A  UC UCCGG  CUGCGCACGUUAAA CG     U
CAGUUUCGAGACGACAAUU^ CA  A GU  A     CC              -  AAAUU 
.       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To To
Star sequence

Lan-Mir-92-o85_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGGUCUUGAUGCGUGCAAUUUUGU -24
Get sequence
Mature sequence

Lan-Mir-92-o85_3p
mirBase accessionNone
Sequence 
38- AAUUGCACGCGUCCCGGCCUAC -60
Get sequence