Mir-92-P1g

MirGeneDB ID

Pma-Mir-92-P1g

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-92a

Paralogues

Pma-Mir-92-P1h Pma-Mir-92-P1o1 Pma-Mir-92-P2g

Orthologues

Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Cel-Mir-92 Esc-Mir-92 Gsp-Mir-92 Hmi-Mir-92 Isc-Mir-92 Obi-Mir-92 Sme-Mir-92

Node of Origin (locus)

P. marinus

Node of Origin (family)

Bilateria

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046115.1: 752414-752471 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P1g)

Mir-17-P1g NC_046115.1: 748761-748823 [+] UCSC Ensembl
Mir-17-P2g NC_046115.1: 749056-749119 [+] UCSC Ensembl
Mir-17-P3g NC_046115.1: 749682-749742 [+] UCSC Ensembl
Mir-19-P1g NC_046115.1: 750373-750438 [+] UCSC Ensembl
Mir-17-P4g NC_046115.1: 751997-752055 [+] UCSC Ensembl
Mir-19-P2g NC_046115.1: 752202-752261 [+] UCSC Ensembl
Mir-92-P1g NC_046115.1: 752414-752471 [+] UCSC Ensembl
Mir-92-P2g NC_046115.1: 754312-754371 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCUUUAUACAACGCGUUCCCUGUCCCGCUGAGGUCAGGAUGGGCAGCAAUGCGUGACUAGAUCCUGUAUUGCACUCGUCCCGGCCUUAGCGAGAUUUAUCGGGUAUCCGAUCAUUUUC

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Structure

        10        20          30        40        50         
UCUUUAUACAACGCGUUCCCU--|  C          A       CA        UGACU 
                       GUC CGCUGAGGUC GGAUGGG  GCAAUGCG     \
                       UAG GCGAUUCCGG CCUGCUC  CGUUAUGU     A
CUUUUACUAGCCUAUGGGCUAUU^  A          C       A-        CCUAG 
      110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Star sequence

Pma-Mir-92-P1g_5p*

mirBase accession

None

Sequence

0- AGGUCAGGAUGGGCAGCAAUGCG -23

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Mature sequence

Pma-Mir-92-P1g_3p

mirBase accession

MIMAT0019435

Sequence

36- UAUUGCACUCGUCCCGGCCUUA -58

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