Mir-92-P1h

MirGeneDB ID

Pma-Mir-92-P1h

Family name

MIR-92 (all species)

Seed

AUUGCAC

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

Paralogues

Pma-Mir-92-P1g Pma-Mir-92-P1o1 Pma-Mir-92-P2g

Orthologues

Asu-Mir-92 Bfl-Mir-92-o1 Bla-Mir-92-o1 Cel-Mir-92 Esc-Mir-92 Gsp-Mir-92 Hmi-Mir-92 Isc-Mir-92 Obi-Mir-92 Sme-Mir-92

Node of Origin (locus)

P. marinus

Node of Origin (family)

Bilateria

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046132.1: 1986098-1986160 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-92-P1h)

Mir-17-P2h NC_046132.1: 1977198-1977260 [+] UCSC Ensembl
Mir-17-P3h-v1 NC_046132.1: 1979765-1979827 [+] UCSC Ensembl
Mir-17-P3h-v2 NC_046132.1: 1979766-1979827 [+] UCSC Ensembl
Mir-19-P1h NC_046132.1: 1980048-1980109 [+] UCSC Ensembl
Mir-17-P4h NC_046132.1: 1982814-1982876 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAUUUAUUUCCACAGUGGCGCAGUCCACCCAGGCUGGGGCAGGCGCGUCAAUACGCUGCCACUGGGUCCUGUAUUGCACUUGUCCCGGCCUGUAUGUGCUGCGAGAGACGCACGUGGGGGUGG

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Structure

        10          20        30        40        50        60  
CAUUUAUUUCCACAGUGG--|    UC  CC              C   UCA     CUGCCA 
                    CGCAG  CA  CAGGCUGGGGCAGG GCG   AUACG      C
                    GCGUC  GU  GUCCGGCCCUGUUC CGU   UAUGU      U
GGUGGGGGUGCACGCAGAGA^    GU  AU              A   ---     CCUGGG 
 120       110       100        90        80           70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Star sequence

Pma-Mir-92-P1h_5p* (predicted)

mirBase accession

None

Sequence

0- AGGCUGGGGCAGGCGCGUCAAUACG -25

Get sequence

Mature sequence

Pma-Mir-92-P1h_3p

mirBase accession

None

Sequence

41- UAUUGCACUUGUCCCGGCCUGU -63

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