Mir-17-P3h-v2

MirGeneDB ID

Pma-Mir-17-P3h-v2

Family name

MIR-17 (all species)

Seed

AAGUGCA

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-17c

Paralogues

Pma-Mir-17-P1g Pma-Mir-17-P2g Pma-Mir-17-P2h Pma-Mir-17-P3g Pma-Mir-17-P3h-v1 Pma-Mir-17-P4g Pma-Mir-17-P4h

Orthologues

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046132.1: 1979766-1979827 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P3h-v2)

Mir-17-P2h NC_046132.1: 1977198-1977260 [+] UCSC Ensembl
Mir-17-P3h-v1 NC_046132.1: 1979765-1979827 [+] UCSC Ensembl
Mir-17-P3h-v2 NC_046132.1: 1979766-1979827 [+] UCSC Ensembl
Mir-19-P1h NC_046132.1: 1980048-1980109 [+] UCSC Ensembl
Mir-17-P4h NC_046132.1: 1982814-1982876 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGCCCUGUCCGUGAAUGAGCGCGCGGGGGAAAAGUGCAAAUAGUGGUAGGUAGUGAUCACUGCCGUCUGCCUACUCCAUUUGCAUUUUGGCCUCCAUGCGUCUCGCCGAGAGACGGAUGGAU

Get precursor sequence

Structure

        10           20        30         40        50          
CGCCCUGUCCGUGAAUGA---     C     A-|          AGU       AGUGAUCA 
                     GCGCG GGGGG  AAAGUGCAAAU   GGUAGGU        \
                     UGCGU CCUCC  UUUUACGUUUA   UCAUCCG        C
UAGGUAGGCAGAGAGCCGCUC     A     GG^          CC-       UCUGCCGU 
120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-17-P3h-v2_5p

mirBase accession

MIMAT0019386

Sequence

0- AAAGUGCAAAUAGUGGUAGGU -21

Get sequence

Star sequence

Pma-Mir-17-P3h-v2_3p*

mirBase accession

None

Sequence

40- CUACUCCAUUUGCAUUUUGGCC -62

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