MirGeneDB 2.1

MirGeneDB ID

Pma-Mir-17-P3h-v1

Family name MIR-17 (all species)
Seed AAAGUGC
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-17c
Paralogues Pma-Mir-17-P1g  Pma-Mir-17-P2g  Pma-Mir-17-P2h  Pma-Mir-17-P3g  Pma-Mir-17-P3h-v2  Pma-Mir-17-P4g  Pma-Mir-17-P4h 
Orthologues
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046132.1: 1979765-1979827 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P3h-v1)
Mir-17-P2h NC_046132.1: 1977198-1977260 [+] UCSC Ensembl
Mir-17-P3h-v1 NC_046132.1: 1979765-1979827 [+] UCSC Ensembl
Mir-17-P3h-v2 NC_046132.1: 1979766-1979827 [+] UCSC Ensembl
Mir-19-P1h NC_046132.1: 1980048-1980109 [+] UCSC Ensembl
Mir-17-P4h NC_046132.1: 1982814-1982876 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGCCCUGUCCGUGAAUGAGCGCGCGGGGGAAAAGUGCAAAUAGUGGUAGGUAGUGAUCACUGCCGUCUGCCUACUCCAUUUGCAUUUUGGCCUCCAUGCGUCUCGCCGAGAGACGGAUGGAU
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Structure
        10         20         30         40        50        60 
CCGCCCUGUCCGUGAAU-   -    C     A-|          AGU       AGUGAUCA 
                  GAG CGCG GGGGG  AAAGUGCAAAU   GGUAGGU        \
                  CUC GCGU CCUCC  UUUUACGUUUA   UCAUCCG        C
UAGGUAGGCAGAGAGCCG   U    A     GG^          CC-       UCUGCCGU 
 120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-17-P3h-v1_5p

mirBase accessionMIMAT0019386
Sequence
0- AAAAGUGCAAAUAGUGGUAGGU -22
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Star sequence

Pma-Mir-17-P3h-v1_3p*

mirBase accessionNone
Sequence
41- CUACUCCAUUUGCAUUUUGGCC -63
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