Mir-17-P3h-v1

MirGeneDB ID

Pma-Mir-17-P3h-v1

Family name

MIR-17 (all species)

Seed

AAAGUGC

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-17c

Paralogues

Pma-Mir-17-P1g Pma-Mir-17-P2g Pma-Mir-17-P2h Pma-Mir-17-P3g Pma-Mir-17-P3h-v2 Pma-Mir-17-P4g Pma-Mir-17-P4h

Orthologues

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046132.1: 1979765-1979827 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-17-P3h-v1)

Mir-17-P2h NC_046132.1: 1977198-1977260 [+] UCSC Ensembl
Mir-17-P3h-v1 NC_046132.1: 1979765-1979827 [+] UCSC Ensembl
Mir-17-P3h-v2 NC_046132.1: 1979766-1979827 [+] UCSC Ensembl
Mir-19-P1h NC_046132.1: 1980048-1980109 [+] UCSC Ensembl
Mir-17-P4h NC_046132.1: 1982814-1982876 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCGCCCUGUCCGUGAAUGAGCGCGCGGGGGAAAAGUGCAAAUAGUGGUAGGUAGUGAUCACUGCCGUCUGCCUACUCCAUUUGCAUUUUGGCCUCCAUGCGUCUCGCCGAGAGACGGAUGGAU

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Structure

        10         20         30         40        50        60 
CCGCCCUGUCCGUGAAU-   -    C     A-|          AGU       AGUGAUCA 
                  GAG CGCG GGGGG  AAAGUGCAAAU   GGUAGGU        \
                  CUC GCGU CCUCC  UUUUACGUUUA   UCAUCCG        C
UAGGUAGGCAGAGAGCCG   U    A     GG^          CC-       UCUGCCGU 
 120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-17-P3h-v1_5p

mirBase accession

MIMAT0019386

Sequence

0- AAAAGUGCAAAUAGUGGUAGGU -22

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Star sequence

Pma-Mir-17-P3h-v1_3p*

mirBase accession

None

Sequence

41- CUACUCCAUUUGCAUUUUGGCC -63

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