MirGeneDB 2.1

MirGeneDB ID

Pma-Mir-17-P2h

Family name MIR-17 (all species)
Seed AAGGUGC
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-18a
Paralogues Pma-Mir-17-P1g  Pma-Mir-17-P2g  Pma-Mir-17-P3g  Pma-Mir-17-P3h-v1  Pma-Mir-17-P3h-v2  Pma-Mir-17-P4g  Pma-Mir-17-P4h 
Orthologues
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046132.1: 1977198-1977260 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-17-P2h)
Mir-17-P2h NC_046132.1: 1977198-1977260 [+] UCSC Ensembl
Mir-17-P3h-v1 NC_046132.1: 1979765-1979827 [+] UCSC Ensembl
Mir-17-P3h-v2 NC_046132.1: 1979766-1979827 [+] UCSC Ensembl
Mir-19-P1h NC_046132.1: 1980048-1980109 [+] UCSC Ensembl
Mir-17-P4h NC_046132.1: 1982814-1982876 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCCUGGCUGAACCCUGUGCUUGCUUGUGCUAAGGUGCAUCUAGUGCAGAUAGUUCCGCUGCGUAAAUGCUACUGCUCUAUGUGCUCCUUUACCCACAAGAGGUCACGCUCGCUGCUUUGCUG
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Structure
        10         20        30          40        50        60 
GCCCUGGCUGAACCCUGU-    G      CU--|   U    C   U    A   UUCCGCU 
                   GCUU CUUGUG    AAGG GCAU UAG GCAG UAG       G
                   UGGA GAACAC    UUCC CGUG AUC CGUC AUC       C
GUCGUUUCGUCGCUCGCAC    -      CCAU^   U    U   U    -   GUAAAUG 
 120       110        100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-17-P2h_5p

mirBase accessionMIMAT0019387
Sequence
0- UAAGGUGCAUCUAGUGCAGAUAG -23
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Star sequence

Pma-Mir-17-P2h_3p*

mirBase accessionMIMAT0019388
Sequence
40- UACUGCUCUAUGUGCUCCUUUAC -63
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