MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-19-P1h

Family name MIR-19 (all species)
Seed GUGCAAA
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-19a
Paralogues Pma-Mir-19-P1g  Pma-Mir-19-P2g  Pma-Mir-19-P2h 
Orthologues
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046132.1: 1980048-1980109 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P1h)		 Mir-17-P2h NC_046132.1: 1977198-1977260 [+] UCSC Ensembl
Mir-17-P3h-v1 NC_046132.1: 1979765-1979827 [+] UCSC Ensembl
Mir-17-P3h-v2 NC_046132.1: 1979766-1979827 [+] UCSC Ensembl
Mir-19-P1h NC_046132.1: 1980048-1980109 [+] UCSC Ensembl
Mir-17-P4h NC_046132.1: 1982814-1982876 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGACGUUCUUCUUCAUUGCCGGUCUCCGCAGUUUUGCGUGUUUAGCACCGCGUUUUGUUGGACAUUGCUGUGCAAACCUACGCAAAGCUGAGGGUACCGUGUAAAAAAAAAAUACUAACAG
Get precursor sequence
Structure
        10         20         30        40          50          
AAGACGUUCUUCUUCAU-   -    CU  G           --|   A    C  GUUUUGU 
                  UGC CGGU  CC CAGUUUUGCGU  GUUU GCAC GC       \
                  AUG GCCA  GG GUCGAAACGCA  CAAA CGUG CG       U
GACAAUCAUAAAAAAAAA   U    UG  A           UC^   -    U  UUACAGG 
120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-19-P1h_5p* (predicted)
mirBase accessionNone
Sequence 
0- AGUUUUGCGUGUUUAGCACCGC -22
Get sequence
Mature sequence

Pma-Mir-19-P1h_3p
mirBase accessionMIMAT0019391
Sequence 
39- UGUGCAAACCUACGCAAAGCUGA -62
Get sequence