MirGeneDB 2.1

MirGeneDB ID

Pma-Mir-19-P2h

Family name MIR-19 (all species)
Seed GUGCAAA
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues Pma-Mir-19-P1g  Pma-Mir-19-P1h  Pma-Mir-19-P2g 
Orthologues
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046132.1: 1985769-1985843 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-19-P2h)
Mir-17-P2h NC_046132.1: 1977198-1977260 [+] UCSC Ensembl
Mir-17-P3h-v1 NC_046132.1: 1979765-1979827 [+] UCSC Ensembl
Mir-17-P3h-v2 NC_046132.1: 1979766-1979827 [+] UCSC Ensembl
Mir-19-P1h NC_046132.1: 1980048-1980109 [+] UCSC Ensembl
Mir-17-P4h NC_046132.1: 1982814-1982876 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AACAAAAAAAAGGAGCUGAGCGCUACGAUUAGUUUUGCAGGGUUUGCAGUCAGCCUCGGCUCGCAUCUUCCCUCCGACCUGCUGUGCAAAUCCAUGCAAAACUGAAUGUGGCUGCUUUAGGUUCGCCGUACAUUU
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Structure
        10         20         30         40        50        60       
AACAAAAAAAAGGAGCU-    -      A           -|        GU    CUCGGCUCGCAU 
                  GAGC GCUACG UUAGUUUUGCA GGGUUUGCA  CAGC            C
                  UUCG CGGUGU AGUCAAAACGU CCUAAACGU  GUCG            U
UUUACAUGCCGCUUGGAU    U      A           A^        --    UCCAGCCUCCCU 
   130       120       110       100        90          80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-19-P2h_5p* (predicted)

mirBase accessionNone
Sequence
0- AGUUUUGCAGGGUUUGCAGUCAGC -24
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Mature sequence

Pma-Mir-19-P2h_3p

mirBase accessionNone
Sequence
52- UGUGCAAAUCCAUGCAAAACUGA -75
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