| MirGeneDB ID | Pdu-Mir-92-o137 |
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| Family name |
MIR-92 (all species) |
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| Seed |
AUUGCAC |
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| Species |
Dumerils clam worm (Platynereis dumerilii) |
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| MiRBase ID |
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| Paralogues |
Pdu-Mir-92-o136
Pdu-Mir-92-o138
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| Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
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| Node of Origin (locus) |
P. dumerilii
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| Node of Origin (family) |
Bilateria
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Genome context
(GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000001.1: 194083611-194083668 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GUGCUUGGAAUUCCUGCAUUUAUGGAGAGACUGGUGGGACUUAUGCAACUUGAUUUUCAACCACAAAUUGCACUUGUCCCGGCCUGCCUGUCCAUAAAAGAAAGCUACUCUUGCUGGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GUGCUUGGAAUUCCUGCA-- G ACU -| UUA C AUUUU
UUUAUGGA AG GG UGGGAC UGCAA UUG \
AAAUACCU UC CC GCCCUG ACGUU AAC C
CGGUCGUUCUCAUCGAAAGA G CGU G^ UUC A ACCAA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| 24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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| Star sequence |
Pdu-Mir-92-o137_5p* |
| mirBase accession | None |
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| Sequence |
0- CUGGUGGGACUUAUGCAACUUG -22
Get sequence
|
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| Mature sequence |
Pdu-Mir-92-o137_3p |
| mirBase accession | None |
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| Sequence |
35- AAUUGCACUUGUCCCGGCCUGCC -58
Get sequence
|
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