MirGeneDB ID | Tur-Mir-92-P23 |
Family name |
MIR-92 (all species) |
Seed |
AUUGCAC |
Species |
Two-spotted spider mite (Tetranychus urticae) |
MiRBase ID |
tur-mir-92
|
Paralogues |
Tur-Mir-92-P21
Tur-Mir-92-P22
|
Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Gsp-Mir-92
Hmi-Mir-92
Isc-Mir-92
Obi-Mir-92
Pmi-Mir-92-o23
Sme-Mir-92
|
Node of Origin (locus) |
T. urticae
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_000239435.1_ASM23943v1_genomic_TUR_traces) |
HE587317.1: 1593042-1593106 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUACUGUCCAUUGGAAUCUCAUACUGAAACAGGCCUAGACUGGUGUCAAUAUUUCAUAUUUUGAUUAUCAUCAUAUUGCACUCGUCCCGGCCUGUUACGGUAUUUAAUCGUGUUUUUAGUGCUCG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUACUGUCCAUUGGAAUCUC--| A UA U U UUCAUAUUU
AUACUG AACAGGCC GAC GGUG CAAUAU U
UAUGGC UUGUCCGG CUG UCAC GUUAUA G
GCUCGUGAUUUUUGUGCUAAUU^ A CC C - CUACUAUUA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Tur-Mir-92-P23_5p* |
mirBase accession | MIMAT0023086 |
Sequence |
0- AGGCCUAGACUGGUGUCAAUAUU -23
Get sequence
|
Mature sequence |
Tur-Mir-92-P23_3p |
mirBase accession | MIMAT0023087 |
Sequence |
43- UAUUGCACUCGUCCCGGCCUGU -65
Get sequence
|