MirGeneDB 3.0

MirGeneDB ID

Rph-Mir-190

Family name

MIR-190 (all species)

Seed

Species

Japanese carpet shell (Ruditapes philippinarum)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-190 Aca-Mir-190-P1 Aca-Mir-190-P3 Aga-Mir-190 Agr-Mir-190 Ami-Mir-190-P1 Ami-Mir-190-P3 Asu-Mir-190 Ava-Mir-190-P26 Ava-Mir-190-P27 Bfl-Mir-190 Bge-Mir-190 Bko-Mir-190 Bla-Mir-190 Bpl-Mir-190 Bta-Mir-190-P1 Bta-Mir-190-P3 Cbr-Mir-190 Cel-Mir-190 Cfa-Mir-190-P1 Cfa-Mir-190-P3 Cja-Mir-190-P1 Cja-Mir-190-P3 Cli-Mir-190-P1 Cmi-Mir-190-P1 Cmi-Mir-190-P3 Cpi-Mir-190-P1 Cpi-Mir-190-P3 Cpo-Mir-190-P1 Cpo-Mir-190-P3 Csc-Mir-190-P17 Csc-Mir-190-P18 Cte-Mir-190 Dan-Mir-190 Dgr-Mir-190-P24 Dgr-Mir-190-P25 Dlo-Mir-190 Dma-Mir-190 Dme-Mir-190 Dmo-Mir-190 Dno-Mir-190-P1 Dno-Mir-190-P3 Dpu-Mir-190 Dre-Mir-190-P1b Dre-Mir-190-P3 Dsi-Mir-190 Dya-Mir-190 Eba-Mir-190 Ebu-Mir-190-P5 Ebu-Mir-190-P6 Eca-Mir-190-P1 Eca-Mir-190-P3 Efe-Mir-190-P9 Efe-Mir-190-P10 Efe-Mir-190-P11 Efe-Mir-190-P12 Egr-Mir-190 Esc-Mir-190 Ete-Mir-190-P1 Ete-Mir-190-P3 Gga-Mir-190-P1 Gga-Mir-190-P3 Gja-Mir-190-P1 Gja-Mir-190-P3 Gmo-Mir-190-P1a Gmo-Mir-190-P1b Gmo-Mir-190-P3 Gpa-Mir-190 Gsa-Mir-190 Hme-Mir-190 Hmi-Mir-190 Hru-Mir-190 Hsa-Mir-190-P1 Hsa-Mir-190-P3 Isc-Mir-190 Laf-Mir-190-P1 Laf-Mir-190-P3 Lan-Mir-190-P7 Lan-Mir-190-P8 Lch-Mir-190-P1 Lch-Mir-190-P3 Lgi-Mir-190-v1 Lgi-Mir-190-v2 Llo-Mir-190-P22 Llo-Mir-190-P23 Loc-Mir-190-P1 Lpo-Mir-190-P13 Lpo-Mir-190-P14 Lpo-Mir-190-P15 Lpo-Mir-190-P16 Mal-Mir-190-P1a Mal-Mir-190-P1b Mal-Mir-190-P3 Mdo-Mir-190-P1 Mdo-Mir-190-P3 Mgi-Mir-190 Mml-Mir-190-P1 Mml-Mir-190-P3 Mmr-Mir-190-P1 Mmr-Mir-190-P3 Mmu-Mir-190-P1 Mmu-Mir-190-P3 Mom-Mir-190 Mun-Mir-190-P1 Neu-Mir-190-P1 Neu-Mir-190-P3 Npo-Mir-190 Oan-Mir-190-P1 Oan-Mir-190-P3 Obi-Mir-190 Ocu-Mir-190-P1 Ocu-Mir-190-P3 Ofu-Mir-190 Ovu-Mir-190 Pab-Mir-190-P1 Pab-Mir-190-P3 Pau-Mir-190 Pbv-Mir-190-P1 Pbv-Mir-190-P3 Pca-Mir-190 Pdu-Mir-190 Pfl-Mir-190 Pma-Mir-190-o1 Pma-Mir-190-o2 Pma-Mir-190-o3 Pmi-Mir-190 Pve-Mir-190 Rno-Mir-190-P1c Rno-Mir-190-P1d Rno-Mir-190-P3 Sha-Mir-190-P1 Sha-Mir-190-P3 Sko-Mir-190 Sma-Mir-190 Sme-Mir-190-P19 Sme-Mir-190-P20 Sme-Mir-190-P21 Snu-Mir-190 Spt-Mir-190-P1 Spt-Mir-190-P3 Sro-Mir-190-P28 Sro-Mir-190-P29 Sro-Mir-190-P30 Sro-Mir-190-P31 Sto-Mir-190-P1 Sto-Mir-190-P3 Tca-Mir-190 Tgu-Mir-190-P1 Tgu-Mir-190-P3 Tni-Mir-190-P1a Tni-Mir-190-P1b Tni-Mir-190-P3 Tur-Mir-190 War-Mir-190 Xbo-Mir-190 Xla-Mir-190-P3a Xla-Mir-190-P3b Xtr-Mir-190-P3

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Ruditapes_GCA_009026015)

CM018539.1: 15813742-15813803 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UAACAUUGGUGAUGGGAUCUGUAUGCAGCGAGAUAUGUUUGAUAUAUUUGGUGGGUAAUUUUGUUCUCCACCGAAUACCAAACAUAUCAAUGUUGCAGCAGGUACAGCUUCUAAUAUACUGG

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Structure

        10           20        30         40        50        60 
UAACAUUGGUGAUGGGA---|    A       A-          AUA          GUAAUU 
                    UCUGU UGCAGCG  GAUAUGUUUG   UAUUUGGUGG      \
                    GGACG ACGUUGU  CUAUACAAAC   AUAAGCCACC      U
GGUCAUAUAAUCUUCGACAU^    -       AA          C--          UCUUGU 
120       110       100         90        80          70

Deep sequencing

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3' NTU

No

Motifs

CNNC at 3p(+17)

Tissue expression

-

+

Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru	Ru

Mature sequence

Rph-Mir-190_5p

mirBase accession

None

Sequence

0- AGAUAUGUUUGAUAUAUUUGGUGG -24

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Star sequence

Rph-Mir-190_3p*

mirBase accession

None

Sequence

39- ACCGAAUACCAAACAUAUCAAUG -62

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