MirGeneDB 3.0
MirGeneDB ID

Pve-Mir-190

Family name MIR-190 (all species)
Seed GAUAUGU
Species Vernerds tusk shell (Pictodentalium vernedei)
MiRBase ID
Paralogues
Orthologues Aae-Mir-190  Aca-Mir-190-P1  Aca-Mir-190-P3  Aga-Mir-190  Agr-Mir-190  Ami-Mir-190-P1  Ami-Mir-190-P3  Asu-Mir-190  Ava-Mir-190-P26  Ava-Mir-190-P27  Bfl-Mir-190  Bge-Mir-190  Bko-Mir-190  Bla-Mir-190  Bpl-Mir-190  Bta-Mir-190-P1  Bta-Mir-190-P3  Cbr-Mir-190  Cel-Mir-190  Cfa-Mir-190-P1  Cfa-Mir-190-P3  Cja-Mir-190-P1  Cja-Mir-190-P3  Cli-Mir-190-P1  Cmi-Mir-190-P1  Cmi-Mir-190-P3  Cpi-Mir-190-P1  Cpi-Mir-190-P3  Cpo-Mir-190-P1  Cpo-Mir-190-P3  Csc-Mir-190-P17  Csc-Mir-190-P18  Cte-Mir-190  Dan-Mir-190  Dgr-Mir-190-P24  Dgr-Mir-190-P25  Dlo-Mir-190  Dma-Mir-190  Dme-Mir-190  Dmo-Mir-190  Dno-Mir-190-P1  Dno-Mir-190-P3  Dpu-Mir-190  Dre-Mir-190-P1b  Dre-Mir-190-P3  Dsi-Mir-190  Dya-Mir-190  Eba-Mir-190  Ebu-Mir-190-P5  Ebu-Mir-190-P6  Eca-Mir-190-P1  Eca-Mir-190-P3  Efe-Mir-190-P9  Efe-Mir-190-P10  Efe-Mir-190-P11  Efe-Mir-190-P12  Egr-Mir-190  Esc-Mir-190  Ete-Mir-190-P1  Ete-Mir-190-P3  Gga-Mir-190-P1  Gga-Mir-190-P3  Gja-Mir-190-P1  Gja-Mir-190-P3  Gmo-Mir-190-P1a  Gmo-Mir-190-P1b  Gmo-Mir-190-P3  Gpa-Mir-190  Gsa-Mir-190  Hme-Mir-190  Hmi-Mir-190  Hru-Mir-190  Hsa-Mir-190-P1  Hsa-Mir-190-P3  Isc-Mir-190  Laf-Mir-190-P1  Laf-Mir-190-P3  Lan-Mir-190-P7  Lan-Mir-190-P8  Lch-Mir-190-P1  Lch-Mir-190-P3  Lgi-Mir-190-v1  Lgi-Mir-190-v2  Llo-Mir-190-P22  Llo-Mir-190-P23  Loc-Mir-190-P1  Lpo-Mir-190-P13  Lpo-Mir-190-P14  Lpo-Mir-190-P15  Lpo-Mir-190-P16  Mal-Mir-190-P1a  Mal-Mir-190-P1b  Mal-Mir-190-P3  Mdo-Mir-190-P1  Mdo-Mir-190-P3  Mgi-Mir-190  Mml-Mir-190-P1  Mml-Mir-190-P3  Mmr-Mir-190-P1  Mmr-Mir-190-P3  Mmu-Mir-190-P1  Mmu-Mir-190-P3  Mom-Mir-190  Mun-Mir-190-P1  Neu-Mir-190-P1  Neu-Mir-190-P3  Npo-Mir-190  Oan-Mir-190-P1  Oan-Mir-190-P3  Obi-Mir-190  Ocu-Mir-190-P1  Ocu-Mir-190-P3  Ofu-Mir-190  Ovu-Mir-190  Pab-Mir-190-P1  Pab-Mir-190-P3  Pau-Mir-190  Pbv-Mir-190-P1  Pbv-Mir-190-P3  Pca-Mir-190  Pdu-Mir-190  Pfl-Mir-190  Pma-Mir-190-o1  Pma-Mir-190-o2  Pma-Mir-190-o3  Pmi-Mir-190  Rno-Mir-190-P1c  Rno-Mir-190-P1d  Rno-Mir-190-P3  Rph-Mir-190  Sha-Mir-190-P1  Sha-Mir-190-P3  Sko-Mir-190  Sma-Mir-190  Sme-Mir-190-P19  Sme-Mir-190-P20  Sme-Mir-190-P21  Snu-Mir-190  Spt-Mir-190-P1  Spt-Mir-190-P3  Sro-Mir-190-P28  Sro-Mir-190-P29  Sro-Mir-190-P30  Sro-Mir-190-P31  Sto-Mir-190-P1  Sto-Mir-190-P3  Tca-Mir-190  Tgu-Mir-190-P1  Tgu-Mir-190-P3  Tni-Mir-190-P1a  Tni-Mir-190-P1b  Tni-Mir-190-P3  Tur-Mir-190  War-Mir-190  Xbo-Mir-190  Xla-Mir-190-P3a  Xla-Mir-190-P3b  Xtr-Mir-190-P3 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(PVE_manual_microRNAloci)		 CM062292.1:371410136-371410396: 101-161 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGGUGUUCAAACUUAAUGCUUGCCACUGCAAGAUAUGUUUGAUAUAUUUGGUGGGAGAUUUAUAUACCACCGAAUAUCAAACAUGUCAUUGUAGGGGUAUGUCUUGCUGCUUUCCUAUCCA
Get precursor sequence
Structure
        10          20        30         40        50        60
AGGUGUUCAAACUUAAU--  U    A      -|             AU       GAGAU 
                   GC UGCC CUGCAA GAUAUGUUUGAUAU  UUGGUGG     U
                   UG AUGG GAUGUU CUGUACAAACUAUA  AGCCACC     U
ACCUAUCCUUUCGUCGUUC  U    G      A^             --       AUAUA 
 .       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Pve-Mir-190_5p
mirBase accessionNone
Sequence 
0- AGAUAUGUUUGAUAUAUUUGGUGG -24
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Star sequence

Pve-Mir-190_3p*
mirBase accessionNone
Sequence 
38- ACCGAAUAUCAAACAUGUCAUUG -61
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