MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-190-P3

Family name MIR-190 (all species)
Seed GAUAUGU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-190
Paralogues
Orthologues Aae-Mir-190  Aca-Mir-190-P3  Aga-Mir-190  Agr-Mir-190  Ami-Mir-190-P3  Asu-Mir-190  Bfl-Mir-190  Bge-Mir-190  Bko-Mir-190  Bla-Mir-190  Bpl-Mir-190  Bta-Mir-190-P3  Cbr-Mir-190  Cel-Mir-190  Cfa-Mir-190-P3  Cja-Mir-190-P3  Cmi-Mir-190-P3  Cpi-Mir-190-P3  Cpo-Mir-190-P3  Cte-Mir-190  Dan-Mir-190  Dlo-Mir-190  Dma-Mir-190  Dme-Mir-190  Dmo-Mir-190  Dno-Mir-190-P3  Dpu-Mir-190  Dre-Mir-190-P3  Dsi-Mir-190  Dya-Mir-190  Eba-Mir-190  Eca-Mir-190-P3  Egr-Mir-190  Esc-Mir-190  Ete-Mir-190-P3  Gga-Mir-190-P3  Gja-Mir-190-P3  Gmo-Mir-190-P3  Gpa-Mir-190  Gsa-Mir-190  Hme-Mir-190  Hmi-Mir-190  Hru-Mir-190  Hsa-Mir-190-P3  Isc-Mir-190  Laf-Mir-190-P3  Lch-Mir-190-P3  Mal-Mir-190-P3  Mdo-Mir-190-P3  Mgi-Mir-190  Mml-Mir-190-P3  Mmr-Mir-190-P3  Mmu-Mir-190-P3  Mom-Mir-190  Neu-Mir-190-P3  Npo-Mir-190  Oan-Mir-190-P3  Obi-Mir-190  Ocu-Mir-190-P3  Ofu-Mir-190  Ovu-Mir-190  Pab-Mir-190-P3  Pau-Mir-190  Pbv-Mir-190-P3  Pca-Mir-190  Pdu-Mir-190  Pfl-Mir-190  Pma-Mir-190-o3  Pmi-Mir-190  Pve-Mir-190  Rno-Mir-190-P3  Rph-Mir-190  Sha-Mir-190-P3  Sko-Mir-190  Sma-Mir-190  Snu-Mir-190  Spt-Mir-190-P3  Sto-Mir-190-P3  Tca-Mir-190  Tgu-Mir-190-P3  Tni-Mir-190-P3  Tur-Mir-190  War-Mir-190  Xbo-Mir-190  Xla-Mir-190-P3a  Xla-Mir-190-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)		 AKAT9956_415224979: 345-404 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GACCCCCCCCCGACCCGCCGUGGUUCUGUCUGAUAUGUUUGAUAUUAGGUUGUUUUACUAAAACUCGACUAAAUAUCAUACAUAUUGCUACAGCGCCCUGGCCACGCCCCCUGCAGCUUC
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Structure
        10          20        30         40        50         
GACCCCCCCCCGACCCG--   U   U    CU-|      U       A     UUUUAC 
                   CCG GGU CUGU   GAUAUGU UGAUAUU GGUUG      \
                   GGU CCG GACA   UUAUACA ACUAUAA UCAGC      U
CUUCGACGUCCCCCGCACC   C   C    UCG^      U       A     UCAAAA 
.       110       100        90        80        70        60
Deep sequencing
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CommentNot in assembly but in trace archive.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-190-P3_5p
mirBase accessionMIMAT0025392
Sequence 
0- UGAUAUGUUUGAUAUUAGGUUG -22
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Proposed targets TargetScanVert: xtr-miR-190
Star sequence

Xtr-Mir-190-P3_3p* (predicted)
mirBase accessionNone
Sequence 
37- ACUAAAUAUCAUACAUAUUGCUA -60
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