MirGeneDB 3.0
MirGeneDB ID

Egr-Mir-190

Family name MIR-190 (all species)
Seed GAUAUGU
Species Hydatid worm (Echinococcus granulosus)
MiRBase ID egr-mir-190
Paralogues
Orthologues Aae-Mir-190  Aca-Mir-190-P1  Aca-Mir-190-P3  Aga-Mir-190  Agr-Mir-190  Ami-Mir-190-P1  Ami-Mir-190-P3  Asu-Mir-190  Ava-Mir-190-P26  Ava-Mir-190-P27  Bfl-Mir-190  Bge-Mir-190  Bko-Mir-190  Bla-Mir-190  Bpl-Mir-190  Bta-Mir-190-P1  Bta-Mir-190-P3  Cbr-Mir-190  Cel-Mir-190  Cfa-Mir-190-P1  Cfa-Mir-190-P3  Cja-Mir-190-P1  Cja-Mir-190-P3  Cli-Mir-190-P1  Cmi-Mir-190-P1  Cmi-Mir-190-P3  Cpi-Mir-190-P1  Cpi-Mir-190-P3  Cpo-Mir-190-P1  Cpo-Mir-190-P3  Csc-Mir-190-P17  Csc-Mir-190-P18  Cte-Mir-190  Dan-Mir-190  Dgr-Mir-190-P24  Dgr-Mir-190-P25  Dlo-Mir-190  Dma-Mir-190  Dme-Mir-190  Dmo-Mir-190  Dno-Mir-190-P1  Dno-Mir-190-P3  Dpu-Mir-190  Dre-Mir-190-P1b  Dre-Mir-190-P3  Dsi-Mir-190  Dya-Mir-190  Eba-Mir-190  Ebu-Mir-190-P5  Ebu-Mir-190-P6  Eca-Mir-190-P1  Eca-Mir-190-P3  Efe-Mir-190-P9  Efe-Mir-190-P10  Efe-Mir-190-P11  Efe-Mir-190-P12  Esc-Mir-190  Ete-Mir-190-P1  Ete-Mir-190-P3  Gga-Mir-190-P1  Gga-Mir-190-P3  Gja-Mir-190-P1  Gja-Mir-190-P3  Gmo-Mir-190-P1a  Gmo-Mir-190-P1b  Gmo-Mir-190-P3  Gpa-Mir-190  Gsa-Mir-190  Hme-Mir-190  Hmi-Mir-190  Hru-Mir-190  Hsa-Mir-190-P1  Hsa-Mir-190-P3  Isc-Mir-190  Laf-Mir-190-P1  Laf-Mir-190-P3  Lan-Mir-190-P7  Lan-Mir-190-P8  Lch-Mir-190-P1  Lch-Mir-190-P3  Lgi-Mir-190-v1  Lgi-Mir-190-v2  Llo-Mir-190-P22  Llo-Mir-190-P23  Loc-Mir-190-P1  Lpo-Mir-190-P13  Lpo-Mir-190-P14  Lpo-Mir-190-P15  Lpo-Mir-190-P16  Mal-Mir-190-P1a  Mal-Mir-190-P1b  Mal-Mir-190-P3  Mdo-Mir-190-P1  Mdo-Mir-190-P3  Mgi-Mir-190  Mml-Mir-190-P1  Mml-Mir-190-P3  Mmr-Mir-190-P1  Mmr-Mir-190-P3  Mmu-Mir-190-P1  Mmu-Mir-190-P3  Mom-Mir-190  Mun-Mir-190-P1  Neu-Mir-190-P1  Neu-Mir-190-P3  Npo-Mir-190  Oan-Mir-190-P1  Oan-Mir-190-P3  Obi-Mir-190  Ocu-Mir-190-P1  Ocu-Mir-190-P3  Ofu-Mir-190  Ovu-Mir-190  Pab-Mir-190-P1  Pab-Mir-190-P3  Pau-Mir-190  Pbv-Mir-190-P1  Pbv-Mir-190-P3  Pca-Mir-190  Pdu-Mir-190  Pfl-Mir-190  Pma-Mir-190-o1  Pma-Mir-190-o2  Pma-Mir-190-o3  Pmi-Mir-190  Pve-Mir-190  Rno-Mir-190-P1c  Rno-Mir-190-P1d  Rno-Mir-190-P3  Rph-Mir-190  Sha-Mir-190-P1  Sha-Mir-190-P3  Sko-Mir-190  Sma-Mir-190  Sme-Mir-190-P19  Sme-Mir-190-P20  Sme-Mir-190-P21  Snu-Mir-190  Spt-Mir-190-P1  Spt-Mir-190-P3  Sro-Mir-190-P28  Sro-Mir-190-P29  Sro-Mir-190-P30  Sro-Mir-190-P31  Sto-Mir-190-P1  Sto-Mir-190-P3  Tca-Mir-190  Tgu-Mir-190-P1  Tgu-Mir-190-P3  Tni-Mir-190-P1a  Tni-Mir-190-P1b  Tni-Mir-190-P3  Tur-Mir-190  War-Mir-190  Xbo-Mir-190  Xla-Mir-190-P3a  Xla-Mir-190-P3b  Xtr-Mir-190-P3 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(GCA_000524195.1_ASM52419v1_Egranulosus)		 APAU02000055.1: 250958-251022 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCAUGAAACGAUUGAGGCCUUCGACAAUGAGAUAUGUUUGGGUUACUUGGUGCUGUGCUCUAUCCUCUUACACCAGUGACCAAACAUAUUCACAUUGUUUGGCCUAGAACGUCAUUUUCACCUU
Get precursor sequence
Structure
        10            20        30         40        50        60  
UGCAUGAAACGAUUGAG----|  UUC       A-           G     U    CUGUGCUC 
                     GCC   GACAAUG  GAUAUGUUUGG UUACU GGUG        U
                     CGG   UUGUUAC  UUAUACAAACC AGUGA CCAC        A
UUCCACUUUUACUGCAAGAUC^  U--       AC           -     -    AUUCUCCU 
   120       110         100        90         80         70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Er Er Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr
Mature sequence

Egr-Mir-190_5p
mirBase accessionMIMAT0020245
Sequence 
0- AGAUAUGUUUGGGUUACUUGGUG -23
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Star sequence

Egr-Mir-190_3p*
mirBase accessionMIMAT0037429
Sequence 
43- CCAGUGACCAAACAUAUUCACA -65
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