MirGeneDB ID | Rno-Mir-190-P1d |
Family name |
MIR-190 (all species) |
Seed |
GAUAUGU |
Species |
Norway rat (Rattus norvegicus) |
MiRBase ID |
rno-mir-190a-2
|
Paralogues |
Rno-Mir-190-P1c
Rno-Mir-190-P3
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Orthologues |
Aae-Mir-190
Aca-Mir-190-P1
Ami-Mir-190-P1
Asu-Mir-190
Bfl-Mir-190
Bge-Mir-190
Bla-Mir-190
Bpl-Mir-190
Bta-Mir-190-P1
Cbr-Mir-190
Cel-Mir-190
Cfa-Mir-190-P1
Cgi-Mir-190
Cli-Mir-190-P1
Cmi-Mir-190-P1
Cpi-Mir-190-P1
Cpo-Mir-190-P1
Cte-Mir-190
Dan-Mir-190
Dma-Mir-190
Dme-Mir-190
Dmo-Mir-190
Dno-Mir-190-P1
Dpu-Mir-190
Dsi-Mir-190
Dya-Mir-190
Esc-Mir-190
Ete-Mir-190-P1
Gga-Mir-190-P1
Gja-Mir-190-P1
Hme-Mir-190
Hsa-Mir-190-P1
Isc-Mir-190
Lch-Mir-190-P1
Loc-Mir-190-P1
Mdo-Mir-190-P1
Mml-Mir-190-P1
Mmu-Mir-190-P1
Mun-Mir-190-P1
Npo-Mir-190
Oan-Mir-190-P1
Obi-Mir-190
Ocu-Mir-190-P1
Ovu-Mir-190
Pbv-Mir-190-P1
Pfl-Mir-190
Pma-Mir-190-o1
Pmi-Mir-190
Sha-Mir-190-P1
Sko-Mir-190
Spt-Mir-190-P1
Sto-Mir-190-P1
Tca-Mir-190
Tgu-Mir-190-P1
Xbo-Mir-190
|
Node of Origin (locus) |
R. norvegicus
|
Node of Origin (family) |
Bilateria
|
Genome context (rn6) |
chr8: 73030059-73030117 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACCUGGAUGCCUUUUCUGCAGGCCUCUGUGUGAUAUGUUUGAUAUAUUAGGUUGUUAUUUAAUCCAACUAUAUAUCAAGCAUAUUCCUACAGUGUCUUGCCCUGUCUCCGGGGGUCCUA
Get precursor sequence
|
Structure | 10 20 30 40 50
ACCUGGAUGCCUUUUCU-- CCU U-| UA UUAU
GCAGG CUGUG GAUAUGUUUGAUAUAU GGUUG U
CGUUC GACAU UUAUACGAACUAUAUA UCAAC U
AUCCUGGGGGCCUCUGUCC UGU CC^ -- CUAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Ad |
Ad |
Br |
Br |
Br |
Ce |
Ce |
Ce |
Ce |
Co |
Co |
Co |
Co |
Dr |
Dr |
Du |
Du |
Du |
Du |
He |
He |
Hi |
Hi |
Il |
Il |
Je |
Je |
Ki |
Ki |
Ki |
Ki |
Li |
Li |
Li |
Li |
Me |
Me |
Mu |
Mu |
Mu |
Mu |
Mu |
Mu |
Mu |
Mu |
Ov |
Pa |
Pa |
St |
St |
St |
Te |
Ut |
Wh |
Br |
Fa |
He |
Ki |
La |
Li |
Li |
Lu |
Mu |
Pa |
Sk |
Sm |
Sp |
St |
Te |
Th |
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Mature sequence |
Rno-Mir-190-P1d_5p |
mirBase accession | MIMAT0000865 |
Sequence |
0- UGAUAUGUUUGAUAUAUUAGGUUG -24
Get sequence
|
Star sequence |
Rno-Mir-190-P1d_3p* |
mirBase accession | MIMAT0017145 |
Sequence |
36- ACUAUAUAUCAAGCAUAUUCCUA -59
Get sequence
|