MirGeneDB 2.1

MirGeneDB ID

Obi-Mir-190

Family name MIR-190 (all species)
Seed GAUAUGU
Species California two-spot octopus (Octopus bimaculoides)
MiRBase ID
Paralogues
Orthologues Aae-Mir-190  Aca-Mir-190-P1  Aca-Mir-190-P3  Ami-Mir-190-P1  Ami-Mir-190-P3  Asu-Mir-190  Bfl-Mir-190  Bge-Mir-190  Bla-Mir-190  Bpl-Mir-190  Bta-Mir-190-P1  Bta-Mir-190-P3  Cbr-Mir-190  Cel-Mir-190  Cfa-Mir-190-P1  Cfa-Mir-190-P3  Cgi-Mir-190  Cli-Mir-190-P1  Cmi-Mir-190-P1  Cmi-Mir-190-P3  Cpi-Mir-190-P1  Cpi-Mir-190-P3  Cpo-Mir-190-P1  Cpo-Mir-190-P3  Csc-Mir-190-P18  Csc-Mir-190-P19  Cte-Mir-190  Dan-Mir-190  Dma-Mir-190  Dme-Mir-190  Dmo-Mir-190  Dno-Mir-190-P1  Dno-Mir-190-P3  Dpu-Mir-190  Dre-Mir-190-P1b  Dre-Mir-190-P3  Dsi-Mir-190  Dya-Mir-190  Ebu-Mir-190-P5  Ebu-Mir-190-P6  Efe-Mir-190-P9  Efe-Mir-190-P10  Efe-Mir-190-P11  Efe-Mir-190-P12  Esc-Mir-190  Ete-Mir-190-P1  Ete-Mir-190-P3  Gga-Mir-190-P1  Gga-Mir-190-P3  Gja-Mir-190-P1  Gja-Mir-190-P3  Gmo-Mir-190-P1a  Gmo-Mir-190-P1b  Gmo-Mir-190-P3  Hme-Mir-190  Hsa-Mir-190-P1  Hsa-Mir-190-P3  Isc-Mir-190  Lan-Mir-190-P7  Lan-Mir-190-P8  Lch-Mir-190-P1  Lch-Mir-190-P3  Lgi-Mir-190-v1  Lgi-Mir-190-v2  Loc-Mir-190-P1  Lpo-Mir-190-P14  Lpo-Mir-190-P15  Lpo-Mir-190-P16  Lpo-Mir-190-P17  Mal-Mir-190-P1a  Mal-Mir-190-P1b  Mal-Mir-190-P3  Mdo-Mir-190-P1  Mdo-Mir-190-P3  Mml-Mir-190-P1  Mml-Mir-190-P3  Mmu-Mir-190-P1  Mmu-Mir-190-P3  Mun-Mir-190-P1  Npo-Mir-190  Oan-Mir-190-P1  Oan-Mir-190-P3  Ocu-Mir-190-P1  Ocu-Mir-190-P3  Ovu-Mir-190  Pbv-Mir-190-P1  Pbv-Mir-190-P3  Pfl-Mir-190  Pma-Mir-190-o1  Pma-Mir-190-o2  Pma-Mir-190-o3  Pmi-Mir-190  Rno-Mir-190-P1c  Rno-Mir-190-P1d  Rno-Mir-190-P3  Sha-Mir-190-P1  Sha-Mir-190-P3  Sko-Mir-190  Sme-Mir-190-P20  Sme-Mir-190-P21  Sme-Mir-190-P22  Spt-Mir-190-P1  Spt-Mir-190-P3  Sto-Mir-190-P1  Sto-Mir-190-P3  Tca-Mir-190  Tgu-Mir-190-P1  Tgu-Mir-190-P3  Tni-Mir-190-P1a  Tni-Mir-190-P1b  Tni-Mir-190-P3  Xbo-Mir-190  Xla-Mir-190-P3a  Xla-Mir-190-P3b  Xtr-Mir-190-P3 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(PRJNA270931_OBI)
KQ418919: 41709-41773 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GUGAUGGUGGUGAUGAUGGAUGCCUUGACCAGAUAUGUUUGAUAUUUUUUGGUGGUUCAAUAUCCUAAGUCCACCAAGUAUCAAUCAUGUCCGUGUCGCGGUAGGCCACUGCAGCAAACACACUU
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Structure
        10         20         30         40        50        60   
GUGAUGGUGGUGAUGAU-  A-    U    CA-|     U       UUU       UUCAAUA 
                  GG  UGCC UGAC   GAUAUG UUGAUAU   UUGGUGG       \
                  CC  AUGG GCUG   CUGUAC AACUAUG   AACCACC       U
UUCACACAAACGACGUCA  GG    C    UGC^     U       ---       UGAAUCC 
   120       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Obi-Mir-190_5p

mirBase accessionNone
Sequence
0- AGAUAUGUUUGAUAUUUUUUGGUGG -25
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Star sequence

Obi-Mir-190_3p*

mirBase accessionNone
Sequence
42- ACCAAGUAUCAAUCAUGUCCGUG -65
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