MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-190-o3

Family name MIR-190 (all species)
Seed GAUAUGU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues Pma-Mir-190-o1  Pma-Mir-190-o2 
Orthologues Aae-Mir-190  Aca-Mir-190-P3  Aga-Mir-190  Agr-Mir-190  Ami-Mir-190-P3  Asu-Mir-190  Bfl-Mir-190  Bge-Mir-190  Bko-Mir-190  Bla-Mir-190  Bpl-Mir-190  Bta-Mir-190-P3  Cbr-Mir-190  Cel-Mir-190  Cfa-Mir-190-P3  Cja-Mir-190-P3  Cmi-Mir-190-P3  Cpi-Mir-190-P3  Cpo-Mir-190-P3  Cte-Mir-190  Dan-Mir-190  Dlo-Mir-190  Dma-Mir-190  Dme-Mir-190  Dmo-Mir-190  Dno-Mir-190-P3  Dpu-Mir-190  Dre-Mir-190-P3  Dsi-Mir-190  Dya-Mir-190  Eba-Mir-190  Eca-Mir-190-P3  Egr-Mir-190  Esc-Mir-190  Ete-Mir-190-P3  Gga-Mir-190-P3  Gja-Mir-190-P3  Gmo-Mir-190-P3  Gpa-Mir-190  Gsa-Mir-190  Hme-Mir-190  Hmi-Mir-190  Hru-Mir-190  Hsa-Mir-190-P3  Isc-Mir-190  Laf-Mir-190-P3  Lch-Mir-190-P3  Mal-Mir-190-P3  Mdo-Mir-190-P3  Mgi-Mir-190  Mml-Mir-190-P3  Mmr-Mir-190-P3  Mmu-Mir-190-P3  Mom-Mir-190  Neu-Mir-190-P3  Npo-Mir-190  Oan-Mir-190-P3  Obi-Mir-190  Ocu-Mir-190-P3  Ofu-Mir-190  Ovu-Mir-190  Pab-Mir-190-P3  Pau-Mir-190  Pbv-Mir-190-P3  Pca-Mir-190  Pdu-Mir-190  Pfl-Mir-190  Pmi-Mir-190  Pve-Mir-190  Rno-Mir-190-P3  Rph-Mir-190  Sha-Mir-190-P3  Sko-Mir-190  Sma-Mir-190  Snu-Mir-190  Spt-Mir-190-P3  Sto-Mir-190-P3  Tca-Mir-190  Tgu-Mir-190-P3  Tni-Mir-190-P3  Tur-Mir-190  War-Mir-190  Xbo-Mir-190  Xla-Mir-190-P3a  Xla-Mir-190-P3b  Xtr-Mir-190-P3 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046125.1: 1050359-1050420 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAAACAACAACCACCGCACGUCCCCCGUGUGAUAUGUUUGAUAUAUUAGGUUGUUUCUUACACACGCAACUAUAUAUCAAACAUAUGCGUACGGUGGACGGGCCGAGUCAGCCUCUACGCC
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Structure
        10          20        30         40        50        60 
AGAAACAACAACCACCGCA--     C       -|              UA     UUUCUU 
                     CGUCC CCGUGUG AUAUGUUUGAUAUAU  GGUUG      \
                     GCAGG GGCAUGC UAUACAAACUAUAUA  UCAAC      A
CCGCAUCUCCGACUGAGCCGG     U       G^              --     GCACAC 
120       110       100        90        80          70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-190-o3_5p
mirBase accessionNone
Sequence 
0- UGAUAUGUUUGAUAUAUUAGGUUG -24
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Star sequence

Pma-Mir-190-o3_3p*
mirBase accessionNone
Sequence 
39- ACUAUAUAUCAAACAUAUGCGUA -62
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