MirGeneDB ID | Dre-Mir-190-P3 |
Family name |
MIR-190 (all species) |
Seed |
GAUAUGU |
Species |
Zebrafish (Danio rerio) |
MiRBase ID |
dre-mir-190b
|
Paralogues |
Dre-Mir-190-P1b
|
Orthologues |
Aae-Mir-190
Aca-Mir-190-P3
Ami-Mir-190-P3
Asu-Mir-190
Bfl-Mir-190
Bge-Mir-190
Bla-Mir-190
Bpl-Mir-190
Bta-Mir-190-P3
Cbr-Mir-190
Cel-Mir-190
Cfa-Mir-190-P3
Cgi-Mir-190
Cmi-Mir-190-P3
Cpi-Mir-190-P3
Cpo-Mir-190-P3
Cte-Mir-190
Dan-Mir-190
Dma-Mir-190
Dme-Mir-190
Dmo-Mir-190
Dno-Mir-190-P3
Dpu-Mir-190
Dsi-Mir-190
Dya-Mir-190
Esc-Mir-190
Ete-Mir-190-P3
Gga-Mir-190-P3
Gja-Mir-190-P3
Gmo-Mir-190-P3
Hme-Mir-190
Hsa-Mir-190-P3
Isc-Mir-190
Lch-Mir-190-P3
Mal-Mir-190-P3
Mdo-Mir-190-P3
Mml-Mir-190-P3
Mmu-Mir-190-P3
Npo-Mir-190
Oan-Mir-190-P3
Obi-Mir-190
Ocu-Mir-190-P3
Ovu-Mir-190
Pbv-Mir-190-P3
Pfl-Mir-190
Pma-Mir-190-o3
Pmi-Mir-190
Rno-Mir-190-P3
Sha-Mir-190-P3
Sko-Mir-190
Spt-Mir-190-P3
Sto-Mir-190-P3
Tca-Mir-190
Tgu-Mir-190-P3
Tni-Mir-190-P3
Xbo-Mir-190
Xla-Mir-190-P3a
Xla-Mir-190-P3b
Xtr-Mir-190-P3
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (danRer11) |
chr16: 17705910-17705973 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGUGGAGUUUCAGAUAUGUUACAGACUAUGUGAUAUGUUUGAUAUUCGGUUGCUUUCUUUAUAUCAUGUCAACUAAAUAUCAGACAUAUUCCUAUAGACUGUGACACAAAUCUUCACAUCUGUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GGUGGAGUUUCAGAUAU-- A U-| CG CUUUCUUU
GUUACAG CUAUG GAUAUGUUUGAUAUU GUUG \
CAGUGUC GAUAU UUAUACAGACUAUAA CAAC A
GUGUCUACACUUCUAAACA A CC^ AU UGUACUAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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Mature sequence |
Dre-Mir-190-P3_5p |
mirBase accession | MIMAT0003747 |
Sequence |
0- UGAUAUGUUUGAUAUUCGGUUG -22
Get sequence
|
Proposed targets |
TargetScanFish: dre-miR-190b
|
Star sequence |
Dre-Mir-190-P3_3p* |
mirBase accession | None |
Sequence |
41- ACUAAAUAUCAGACAUAUUCCUA -64
Get sequence
|