Mir-190-P1b

MirGeneDB ID

Dre-Mir-190-P1b

Family name

MIR-190 (all species)

Seed

GAUAUGU

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-190a

Paralogues

Dre-Mir-190-P3

Orthologues

Aae-Mir-190 Aca-Mir-190-P1 Aga-Mir-190 Agr-Mir-190 Ami-Mir-190-P1 Asu-Mir-190 Bfl-Mir-190 Bge-Mir-190 Bko-Mir-190 Bla-Mir-190 Bpl-Mir-190 Bta-Mir-190-P1 Cbr-Mir-190 Cel-Mir-190 Cfa-Mir-190-P1 Cja-Mir-190-P1 Cli-Mir-190-P1 Cmi-Mir-190-P1 Cpi-Mir-190-P1 Cpo-Mir-190-P1 Cte-Mir-190 Dan-Mir-190 Dlo-Mir-190 Dma-Mir-190 Dme-Mir-190 Dmo-Mir-190 Dno-Mir-190-P1 Dpu-Mir-190 Dsi-Mir-190 Dya-Mir-190 Eba-Mir-190 Eca-Mir-190-P1 Egr-Mir-190 Esc-Mir-190 Ete-Mir-190-P1 Gga-Mir-190-P1 Gja-Mir-190-P1 Gmo-Mir-190-P1b Gpa-Mir-190 Gsa-Mir-190 Hme-Mir-190 Hmi-Mir-190 Hru-Mir-190 Hsa-Mir-190-P1 Isc-Mir-190 Laf-Mir-190-P1 Lch-Mir-190-P1 Loc-Mir-190-P1 Mal-Mir-190-P1b Mdo-Mir-190-P1 Mgi-Mir-190 Mml-Mir-190-P1 Mmr-Mir-190-P1 Mmu-Mir-190-P1 Mom-Mir-190 Mun-Mir-190-P1 Neu-Mir-190-P1 Npo-Mir-190 Oan-Mir-190-P1 Obi-Mir-190 Ocu-Mir-190-P1 Ofu-Mir-190 Ovu-Mir-190 Pab-Mir-190-P1 Pau-Mir-190 Pbv-Mir-190-P1 Pca-Mir-190 Pdu-Mir-190 Pfl-Mir-190 Pma-Mir-190-o1 Pmi-Mir-190 Pve-Mir-190 Rph-Mir-190 Sha-Mir-190-P1 Sko-Mir-190 Sma-Mir-190 Snu-Mir-190 Spt-Mir-190-P1 Sto-Mir-190-P1 Tca-Mir-190 Tgu-Mir-190-P1 Tni-Mir-190-P1b Tur-Mir-190 War-Mir-190 Xbo-Mir-190

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(danRer11)

chr25: 33139120-33139178 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GACCUGGAAGCCUUUCUGCAGGCCUCUGUUUGAUAUGUUUGAUAUAUUAGGUUGUUAUUCUGUCCAACUAUAUAUCAAACAUAUUCCUACAGUGUCCUGCUCUGUCUCCAGACUCGUGU

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Structure

        10          20        30         40        50         
GACCUGGAAGCCUUUCU--     CCU    UU-|               UA     UUAU 
                   GCAGG   CUGU   GAUAUGUUUGAUAUAU  GGUUG    U
                   CGUCC   GACA   UUAUACAAACUAUAUA  UCAAC    C
UGUGCUCAGACCUCUGUCU     UGU    UCC^               --     CUGU 
       110       100        90        80        70          60

Deep sequencing

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Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-190-P1b_5p

mirBase accession

MIMAT0001854

Sequence

0- UGAUAUGUUUGAUAUAUUAGGUUG -24

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Proposed targets

TargetScanFish: dre-miR-190

Star sequence

Dre-Mir-190-P1b_3p*

mirBase accession

None

Sequence

36- ACUAUAUAUCAAACAUAUUCCUA -59

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