MirGeneDB ID | Tni-Mir-190-P1a |
Family name |
MIR-190 (all species) |
Seed |
GAUAUGU |
Species |
Pufferfish (Tetraodon nigroviridis) |
MiRBase ID |
|
Paralogues |
Tni-Mir-190-P1b
Tni-Mir-190-P3
|
Orthologues |
Aae-Mir-190
Aca-Mir-190-P1
Ami-Mir-190-P1
Asu-Mir-190
Bfl-Mir-190
Bge-Mir-190
Bla-Mir-190
Bpl-Mir-190
Bta-Mir-190-P1
Cbr-Mir-190
Cel-Mir-190
Cfa-Mir-190-P1
Cgi-Mir-190
Cli-Mir-190-P1
Cmi-Mir-190-P1
Cpi-Mir-190-P1
Cpo-Mir-190-P1
Cte-Mir-190
Dan-Mir-190
Dma-Mir-190
Dme-Mir-190
Dmo-Mir-190
Dno-Mir-190-P1
Dpu-Mir-190
Dsi-Mir-190
Dya-Mir-190
Esc-Mir-190
Ete-Mir-190-P1
Gga-Mir-190-P1
Gja-Mir-190-P1
Gmo-Mir-190-P1a
Hme-Mir-190
Hsa-Mir-190-P1
Isc-Mir-190
Lch-Mir-190-P1
Loc-Mir-190-P1
Mal-Mir-190-P1a
Mdo-Mir-190-P1
Mml-Mir-190-P1
Mmu-Mir-190-P1
Mun-Mir-190-P1
Npo-Mir-190
Oan-Mir-190-P1
Obi-Mir-190
Ocu-Mir-190-P1
Ovu-Mir-190
Pbv-Mir-190-P1
Pfl-Mir-190
Pma-Mir-190-o1
Pmi-Mir-190
Sha-Mir-190-P1
Sko-Mir-190
Spt-Mir-190-P1
Sto-Mir-190-P1
Tca-Mir-190
Tgu-Mir-190-P1
Xbo-Mir-190
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Bilateria
|
Genome context (Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
5: 2569527-2569586 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CACCGGAGGCCUUCUCUGCAGGGCUCUGUCUGAUAUGUUUGAUAUAUUAGGUUGUUAUUCAGUCCCAACUAUAUAUCAAACAUAUUCCUACAGUGUCCCGCUCUGUCUACAGAGUGUCUG
Get precursor sequence
|
Structure | 10 20 30 40 50
CACCGGAGGCCUUCUCU-- A U CU-| UA UUAUU
GC GGGC CUGU GAUAUGUUUGAUAUAU GGUUG \
CG CCUG GACA UUAUACAAACUAUAUA UCAAC C
GUCUGUGAGACAUCUGUCU C U UCC^ -- CCUGA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Tni-Mir-190-P1a_5p |
mirBase accession | None |
Sequence |
0- UGAUAUGUUUGAUAUAUUAGGUUG -24
Get sequence
|
Star sequence |
Tni-Mir-190-P1a_3p* |
mirBase accession | None |
Sequence |
37- ACUAUAUAUCAAACAUAUUCCUA -60
Get sequence
|