Mir-190-P1a

MirGeneDB ID

Gmo-Mir-190-P1a

Family name

MIR-190 (all species)

Seed

GAUAUGU

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-190a-1

Paralogues

Gmo-Mir-190-P1b Gmo-Mir-190-P3

Orthologues

Aae-Mir-190 Aca-Mir-190-P1 Ami-Mir-190-P1 Asu-Mir-190 Bfl-Mir-190 Bge-Mir-190 Bla-Mir-190 Bpl-Mir-190 Bta-Mir-190-P1 Cbr-Mir-190 Cel-Mir-190 Cfa-Mir-190-P1 Cgi-Mir-190 Cli-Mir-190-P1 Cmi-Mir-190-P1 Cpi-Mir-190-P1 Cpo-Mir-190-P1 Cte-Mir-190 Dan-Mir-190 Dma-Mir-190 Dme-Mir-190 Dmo-Mir-190 Dno-Mir-190-P1 Dpu-Mir-190 Dsi-Mir-190 Dya-Mir-190 Esc-Mir-190 Ete-Mir-190-P1 Gga-Mir-190-P1 Gja-Mir-190-P1 Hme-Mir-190 Hsa-Mir-190-P1 Isc-Mir-190 Lch-Mir-190-P1 Loc-Mir-190-P1 Mal-Mir-190-P1a Mdo-Mir-190-P1 Mml-Mir-190-P1 Mmu-Mir-190-P1 Mun-Mir-190-P1 Npo-Mir-190 Oan-Mir-190-P1 Obi-Mir-190 Ocu-Mir-190-P1 Ovu-Mir-190 Pbv-Mir-190-P1 Pfl-Mir-190 Pma-Mir-190-o1 Pmi-Mir-190 Sha-Mir-190-P1 Sko-Mir-190 Spt-Mir-190-P1 Sto-Mir-190-P1 Tca-Mir-190 Tgu-Mir-190-P1 Tni-Mir-190-P1a Xbo-Mir-190

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_3816: 322284-322343 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UACCGAAGGCCUUCUAUGCAGGGCUCUGUGUGAUAUGUUUGAUAUAUUAGGUUGUUUUUCCACUCCAACUAUAUAUCAAACAUAUUCCUACAGUGUCCCGCGCCGUCUACAGUUGUUGAU

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Structure

        10          20        30         40        50          
UACCGAAGGCCUUCUAU--  A    U     U-|               UA     UUUUU 
                   GC GGGC CUGUG  GAUAUGUUUGAUAUAU  GGUUG     \
                   CG CCUG GACAU  UUAUACAAACUAUAUA  UCAAC     C
UAGUUGUUGACAUCUGCCG  C    U     CC^               --     CUCAC 
.       110       100        90        80          70

Deep sequencing

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Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Mature sequence

Gmo-Mir-190-P1a_5p

mirBase accession

MIMAT0044252

Sequence

0- UGAUAUGUUUGAUAUAUUAGGUUG -24

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Star sequence

Gmo-Mir-190-P1a_3p*

mirBase accession

MIMAT0044253

Sequence

37- ACUAUAUAUCAAACAUAUUCCUA -60

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