MirGeneDB 3.0

MirGeneDB ID

Lpo-Mir-190-P14

Family name MIR-190 (all species)
Seed GAUAUGU
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-190-P13  Lpo-Mir-190-P15  Lpo-Mir-190-P16 
Orthologues Aae-Mir-190  Aga-Mir-190  Agr-Mir-190  Asu-Mir-190  Bfl-Mir-190  Bge-Mir-190  Bko-Mir-190  Bla-Mir-190  Bpl-Mir-190  Cbr-Mir-190  Cel-Mir-190  Cte-Mir-190  Dan-Mir-190  Dlo-Mir-190  Dma-Mir-190  Dme-Mir-190  Dmo-Mir-190  Dpu-Mir-190  Dsi-Mir-190  Dya-Mir-190  Eba-Mir-190  Egr-Mir-190  Esc-Mir-190  Gpa-Mir-190  Gsa-Mir-190  Hme-Mir-190  Hmi-Mir-190  Hru-Mir-190  Isc-Mir-190  Mgi-Mir-190  Mom-Mir-190  Npo-Mir-190  Obi-Mir-190  Ofu-Mir-190  Ovu-Mir-190  Pau-Mir-190  Pca-Mir-190  Pdu-Mir-190  Pfl-Mir-190  Pmi-Mir-190  Pve-Mir-190  Rph-Mir-190  Sko-Mir-190  Sma-Mir-190  Snu-Mir-190  Tca-Mir-190  Tur-Mir-190  War-Mir-190  Xbo-Mir-190 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Bilateria
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)
NW_013666147.1: 207188-207248 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UAUCAGGAAAUGAGAGAUCCUUUCGCUGUGAGAUAUGUUUGAUAUUCUUGGUUGUGACACUCAUUCCAACCAGGAAUCAGACAUAUGCUUAUAGAGAGGGGCAAUUCUGCCAAAAACGUCC
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Structure
        10          20        30         40        50        60
UAUCAGGAAAUGAGAGAU--      G       -|          AU         UGACA 
                    CCUUUC CUGUGAG AUAUGUUUGAU  UCUUGGUUG     C
                    GGGGAG GAUAUUC UAUACAGACUA  AGGACCAAC     U
CCUGCAAAAACCGUCUUAAC      A       G^          --         CUUAC 
 .       110       100        90        80          70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ge Ge So So So To
Mature sequence

Lpo-Mir-190-P14_5p

mirBase accessionNone
Sequence
0- AGAUAUGUUUGAUAUUCUUGGUUG -24
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Star sequence

Lpo-Mir-190-P14_3p*

mirBase accessionNone
Sequence
38- ACCAGGAAUCAGACAUAUGCUUA -61
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