Mir-190-P16

MirGeneDB ID

Lpo-Mir-190-P16

Family name

MIR-190 (all species)

Seed

GAUAUGU

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-190-P13 Lpo-Mir-190-P14 Lpo-Mir-190-P15

Orthologues

Aae-Mir-190 Aga-Mir-190 Agr-Mir-190 Asu-Mir-190 Bfl-Mir-190 Bge-Mir-190 Bko-Mir-190 Bla-Mir-190 Bpl-Mir-190 Cbr-Mir-190 Cel-Mir-190 Cte-Mir-190 Dan-Mir-190 Dlo-Mir-190 Dma-Mir-190 Dme-Mir-190 Dmo-Mir-190 Dpu-Mir-190 Dsi-Mir-190 Dya-Mir-190 Eba-Mir-190 Egr-Mir-190 Esc-Mir-190 Gpa-Mir-190 Gsa-Mir-190 Hme-Mir-190 Hmi-Mir-190 Hru-Mir-190 Isc-Mir-190 Mgi-Mir-190 Mom-Mir-190 Npo-Mir-190 Obi-Mir-190 Ofu-Mir-190 Ovu-Mir-190 Pau-Mir-190 Pca-Mir-190 Pdu-Mir-190 Pfl-Mir-190 Pmi-Mir-190 Pve-Mir-190 Rph-Mir-190 Sko-Mir-190 Sma-Mir-190 Snu-Mir-190 Tca-Mir-190 Tur-Mir-190 War-Mir-190 Xbo-Mir-190

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Bilateria

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013666463.1: 88125-88185 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UUGCAGAGAAGAAAGGAUCCCUAUGCUGUGAGAUAUGUUUGAUAUUCUUGGUUGUGAAACUUAUUUCAACUAAGAGUCAAACAUAUGCUUAUAGAGGGGGGGAAAUACCUAUCAAAAAAAC

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Structure

        10         20         30         40        50        60
UUGCAGAGAAGAAAGGA-     AUG-       -|          AU         UGAAA 
                  UCCCU    CUGUGAG AUAUGUUUGAU  UCUUGGUUG     C
                  AGGGG    GAUAUUC UAUACAAACUG  AGAAUCAAC     U
CAAAAAAACUAUCCAUAA     GGGA       G^          --         UUUAU 
 .       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Ge	Ge	So	So	So	To

Mature sequence

Lpo-Mir-190-P16_5p

mirBase accession

None

Sequence

0- AGAUAUGUUUGAUAUUCUUGGUUG -24

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Star sequence

Lpo-Mir-190-P16_3p*

mirBase accession

None

Sequence

38- ACUAAGAGUCAAACAUAUGCUUA -61

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