Mir-190-P29

MirGeneDB ID

Sro-Mir-190-P29

Family name

MIR-190 (all species)

Seed

GAUAUGU

Species

Roscoff worm (Symsagittifera roscoffensis)

MiRBase ID

Paralogues

Sro-Mir-190-P28 Sro-Mir-190-P30 Sro-Mir-190-P31

Orthologues

Aae-Mir-190 Aga-Mir-190 Agr-Mir-190 Asu-Mir-190 Bfl-Mir-190 Bge-Mir-190 Bko-Mir-190 Bla-Mir-190 Bpl-Mir-190 Cbr-Mir-190 Cel-Mir-190 Cte-Mir-190 Dan-Mir-190 Dlo-Mir-190 Dma-Mir-190 Dme-Mir-190 Dmo-Mir-190 Dpu-Mir-190 Dsi-Mir-190 Dya-Mir-190 Eba-Mir-190 Egr-Mir-190 Esc-Mir-190 Gpa-Mir-190 Gsa-Mir-190 Hme-Mir-190 Hmi-Mir-190 Hru-Mir-190 Isc-Mir-190 Mgi-Mir-190 Mom-Mir-190 Npo-Mir-190 Obi-Mir-190 Ofu-Mir-190 Ovu-Mir-190 Pau-Mir-190 Pca-Mir-190 Pdu-Mir-190 Pfl-Mir-190 Pmi-Mir-190 Pve-Mir-190 Rph-Mir-190 Sko-Mir-190 Sma-Mir-190 Snu-Mir-190 Tca-Mir-190 Tur-Mir-190 War-Mir-190 Xbo-Mir-190

Node of Origin (locus)

S. roscoffensis

Node of Origin (family)

Bilateria

Genome context
(GCA_025153585.1_SymRos_1_5_genomic)

JANVAR010000665.1: 1781201-1781270 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAGUUUUUCUAAAUGGUCAAUUGAAUACAGUGAUAUGUACUUAUAGGGGUUAUAGUUGACUAUAAAACCAUAUCGGUAACCCCUCUUAGUGCAUAUUUCUGUUCUAUGGACACGAUAAGAACUGGCAACA

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Structure

        10             20        30        40        50        60    
UAGUUUUUCUAAAUGGU-----| AUU  AU    U          UAU        UAGUUGACUAU 
                      CA   GA  ACAG GAUAUGUACU   AGGGGUUA           A
                      GU   CU  UGUC UUAUACGUGA   UCCCCAAU           A
ACAACGGUCAAGAAUAGCACAG^ AU-  --    U          UUC        GGCUAUACCAA 
.       120       110          100        90        80        70

Deep sequencing

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3' NTU

Motifs

Tissue expression

Po

Mature sequence

Sro-Mir-190-P29_5p

mirBase accession

None

Sequence

0- UGAUAUGUACUUAUAGGGGUUA -22

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Star sequence

Sro-Mir-190-P29_3p*

mirBase accession

None

Sequence

48- ACCCCUCUUAGUGCAUAUUUCU -70

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