Mir-190-P11

MirGeneDB ID

Efe-Mir-190-P11

Family name

MIR-190 (all species)

Seed

GAUAUGU

Species

Common brandling worm (Eisenia fetida)

MiRBase ID

Paralogues

Efe-Mir-190-P9 Efe-Mir-190-P10 Efe-Mir-190-P12

Orthologues

Aae-Mir-190 Aga-Mir-190 Agr-Mir-190 Asu-Mir-190 Bfl-Mir-190 Bge-Mir-190 Bko-Mir-190 Bla-Mir-190 Bpl-Mir-190 Cbr-Mir-190 Cel-Mir-190 Cte-Mir-190 Dan-Mir-190 Dlo-Mir-190 Dma-Mir-190 Dme-Mir-190 Dmo-Mir-190 Dpu-Mir-190 Dsi-Mir-190 Dya-Mir-190 Eba-Mir-190 Egr-Mir-190 Esc-Mir-190 Gpa-Mir-190 Gsa-Mir-190 Hme-Mir-190 Hmi-Mir-190 Hru-Mir-190 Isc-Mir-190 Mgi-Mir-190 Mom-Mir-190 Npo-Mir-190 Obi-Mir-190 Ofu-Mir-190 Ovu-Mir-190 Pau-Mir-190 Pca-Mir-190 Pdu-Mir-190 Pfl-Mir-190 Pmi-Mir-190 Pve-Mir-190 Rph-Mir-190 Sko-Mir-190 Sma-Mir-190 Snu-Mir-190 Tca-Mir-190 Tur-Mir-190 War-Mir-190 Xbo-Mir-190

Node of Origin (locus)

E. fetida

Node of Origin (family)

Bilateria

Genome context
(Efe_combined)

Efet.01.129016: 2219-2283 [+]

Precursor
(pre-Mir +30nt flank)

AAUGCAGAGGAAAGCUCGCUAUCGUCCGUGAGAUAUGUUUGAUAUAUUUGGUGGUUCGUCGUUGGCUAAGUCCACCGAUUGUCAGACAUAUCUAGCGGAGAGGCGCUGCAGCGCAACUGGGAAGG

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Structure

        10            20        30        40        50        60   
AAUGCAGAGGAAAGCUC----|  A  G     G              UAU       UUCGUCGU 
                     GCU UC UCCGU AGAUAUGUUUGAUA   UUGGUGG        \
                     CGG AG AGGCG UCUAUACAGACUGU   AGCCACC        U
GGAAGGGUCAACGCGACGUCG^  -  -     A              U--       UGAAUCGG 
   120       110        100         90        80          70

Deep sequencing

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3' NTU

Motifs

Tissue expression

To

Mature sequence

Efe-Mir-190-P11_5p

mirBase accession

None

Sequence

0- AGAUAUGUUUGAUAUAUUUGGUGG -24

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Star sequence

Efe-Mir-190-P11_3p*

mirBase accession

None

Sequence

43- ACCGAUUGUCAGACAUAUCUAG -65

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