MirGeneDB ID | Efe-Mir-190-P9 |
Family name |
MIR-190 (all species) |
Seed |
GAUAUGU |
Species |
Common brandling worm (Eisenia fetida) |
MiRBase ID |
|
Paralogues |
Efe-Mir-190-P10
Efe-Mir-190-P11
Efe-Mir-190-P12
|
Orthologues |
Aae-Mir-190
Asu-Mir-190
Bfl-Mir-190
Bge-Mir-190
Bla-Mir-190
Bpl-Mir-190
Cbr-Mir-190
Cel-Mir-190
Cgi-Mir-190
Cte-Mir-190
Dan-Mir-190
Dma-Mir-190
Dme-Mir-190
Dmo-Mir-190
Dpu-Mir-190
Dsi-Mir-190
Dya-Mir-190
Esc-Mir-190
Hme-Mir-190
Isc-Mir-190
Npo-Mir-190
Obi-Mir-190
Ovu-Mir-190
Pfl-Mir-190
Pmi-Mir-190
Sko-Mir-190
Tca-Mir-190
Xbo-Mir-190
|
Node of Origin (locus) |
E. fetida
|
Node of Origin (family) |
Bilateria
|
Genome context (Efe_combined) |
Efet.01.392904: 384-443 [+]
|
Precursor (pre-Mir +30nt flank) |
ACAGUCAACAGAUGUGCUCCAUCUAAAGCCUGAUAUGUUUGAUAUUUGGUUUGUUGAAAUGAUAGCCAACCGUGCAUCGAACAUAUCACGCAAGAAAGAGAGCCUUUCACCAAGAUGUCG
Get precursor sequence
|
Structure | 10 20 30 40 50
ACAGUCAACAGAUGUGC----| CA AAA C AUU UGUUGAA
UC UCU GC UGAUAUGUUUGAU UGGUU A
AG AGA CG ACUAUACAAGCUA GCCAA U
GCUGUAGAACCACUUUCCGAG^ AA A-- C CGU CCGAUAG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Efe-Mir-190-P9_5p |
mirBase accession | None |
Sequence |
0- UGAUAUGUUUGAUAUUUGGUUU -22
Get sequence
|
Star sequence |
Efe-Mir-190-P9_3p* |
mirBase accession | None |
Sequence |
38- ACCGUGCAUCGAACAUAUCACG -60
Get sequence
|