Mir-190-P27

MirGeneDB ID

Ava-Mir-190-P27

Family name

MIR-190 (all species)

Seed

GAUAUGU

Species

Bdelloid rotifer (Adineta vaga)

MiRBase ID

Paralogues

Ava-Mir-190-P26

Orthologues

Aae-Mir-190 Aga-Mir-190 Agr-Mir-190 Asu-Mir-190 Bfl-Mir-190 Bge-Mir-190 Bko-Mir-190 Bla-Mir-190 Bpl-Mir-190 Cbr-Mir-190 Cel-Mir-190 Cte-Mir-190 Dan-Mir-190 Dlo-Mir-190 Dma-Mir-190 Dme-Mir-190 Dmo-Mir-190 Dpu-Mir-190 Dsi-Mir-190 Dya-Mir-190 Eba-Mir-190 Egr-Mir-190 Esc-Mir-190 Gpa-Mir-190 Gsa-Mir-190 Hme-Mir-190 Hmi-Mir-190 Hru-Mir-190 Isc-Mir-190 Mgi-Mir-190 Mom-Mir-190 Npo-Mir-190 Obi-Mir-190 Ofu-Mir-190 Ovu-Mir-190 Pau-Mir-190 Pca-Mir-190 Pdu-Mir-190 Pfl-Mir-190 Pmi-Mir-190 Pve-Mir-190 Rph-Mir-190 Sko-Mir-190 Sma-Mir-190 Snu-Mir-190 Tca-Mir-190 Tur-Mir-190 War-Mir-190 Xbo-Mir-190

Node of Origin (locus)

A. vaga

Node of Origin (family)

Bilateria

Genome context
(GCA_021613535.1_ASM2161353v1_AVA)

CP075494.1: 7991333-7991392 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

UUGAUAGGGAUGAAUACAGAUUUGUUGUCAUGAUAUGUUUGAUAUUUGGUUGUUUGAUCUAUAAUUCAACCGAGUAUUGCUCAUAUCUGCACAAUUUAUCUUCAUCAACAAAGACAAUUG

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Structure

        10          20         30        40        50         
UUGAUAGGGAUGAAUAC--    UU     -| U      UU             UUUGAU 
                   AGAU  GUUGU CA GAUAUG  UGAUAUUUGGUUG      C
                   UCUA  UAACA GU CUAUAC  GUUAUGAGCCAAC      U
GUUAACAGAAACAACUACU    UU     C^ -      UC             UUAAUA 
.       110       100        90         80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To	To

Mature sequence

Ava-Mir-190-P27_5p

mirBase accession

None

Sequence

0- UGAUAUGUUUGAUAUUUGGUUG -22

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Star sequence

Ava-Mir-190-P27_3p*

mirBase accession

None

Sequence

38- ACCGAGUAUUGCUCAUAUCUGC -60

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