MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-190-P20

Family name MIR-190 (all species)
Seed GAUAUGU
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-190a
Paralogues Sme-Mir-190-P19  Sme-Mir-190-P21 
Orthologues Aae-Mir-190  Aga-Mir-190  Agr-Mir-190  Asu-Mir-190  Bfl-Mir-190  Bge-Mir-190  Bko-Mir-190  Bla-Mir-190  Bpl-Mir-190  Cbr-Mir-190  Cel-Mir-190  Cte-Mir-190  Dan-Mir-190  Dlo-Mir-190  Dma-Mir-190  Dme-Mir-190  Dmo-Mir-190  Dpu-Mir-190  Dsi-Mir-190  Dya-Mir-190  Eba-Mir-190  Egr-Mir-190  Esc-Mir-190  Gpa-Mir-190  Gsa-Mir-190  Hme-Mir-190  Hmi-Mir-190  Hru-Mir-190  Isc-Mir-190  Mgi-Mir-190  Mom-Mir-190  Npo-Mir-190  Obi-Mir-190  Ofu-Mir-190  Ovu-Mir-190  Pau-Mir-190  Pca-Mir-190  Pdu-Mir-190  Pfl-Mir-190  Pmi-Mir-190  Pve-Mir-190  Rph-Mir-190  Sko-Mir-190  Sma-Mir-190  Snu-Mir-190  Tca-Mir-190  Tur-Mir-190  War-Mir-190  Xbo-Mir-190 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Bilateria
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000018_dd_Smes_g4_18: 365786-365839 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUGAUGAUGGUCUAUUGUGAUUAACUUCGAGAUAUGUUUGGUUAAUUGGUGAUAGGUAACCACCACUGACCGAGCAUAUCCAGUUGUUAAUUUUCAAGCAUCAACUCGAUUUU
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Structure
        10          20        30        40        50       
UCUGAUGAUGGUCUAUUGU--|      UUCGA              AU     AUAG 
                     GAUUAAC     GAUAUGUUUGGUUA  UGGUG    \
                     UUAAUUG     CUAUACGAGCCAGU  ACCAC    G
UUUUAGCUCAACUACGAACUU^      UUGAC              C-     CAAU 
  110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Mature sequence

Sme-Mir-190-P20_5p
mirBase accessionMIMAT0004001
Sequence 
0- AGAUAUGUUUGGUUAAUUGGUGA -23
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Star sequence

Sme-Mir-190-P20_3p*
mirBase accessionMIMAT0004002
Sequence 
32- ACCACUGACCGAGCAUAUCCAG -54
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