MirGeneDB 3.0
MirGeneDB ID

Rph-Mir-67-v1

Family name MIR-67 (all species)
Seed CACAACC
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues Rph-Mir-67-v2 
Orthologues Aae-Mir-67-v1  Aga-Mir-67-v1  Agr-Mir-67-v1  Asu-Mir-67  Bge-Mir-67  Cbr-Mir-67  Cel-Mir-67  Cte-Mir-67  Dan-Mir-67-v1  Dgr-Mir-67  Dma-Mir-67  Dme-Mir-67-v1  Dmo-Mir-67-v1  Dpu-Mir-67  Dsi-Mir-67-v1  Dya-Mir-67-v1  Eba-Mir-67-v1  Egr-Mir-67  Gsa-Mir-67  Hme-Mir-67-v1  Hru-Mir-67  Isc-Mir-67  Lan-Mir-67  Lgi-Mir-67  Mom-Mir-67-v1  Npo-Mir-67  Obi-Mir-67  Ofu-Mir-67  Ovu-Mir-67  Pau-Mir-67  Pca-Mir-67  Pcr-Mir-67-v1  Pdu-Mir-67  Pve-Mir-67-v1  Sma-Mir-67  Sme-Mir-67  Snu-Mir-67  Tca-Mir-67-v1  Tur-Mir-67  War-Mir-67-v1 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Ruditapes_GCA_009026015)		 CM018528.1: 3998066-3998123 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCAGCUCAGAUGGAGAUAGUGUGUCCUUGACCUUGUUCAGCUGGGUUGCGAUGUAAUAGAAAUCAUCACAACCUGCUUGAAUGAGGACAAGUGCAUUCUGUAACAACAUAAAGAUUUC
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Structure
        10          20        30         40        50        
UCAGCUCAGAUGGAGAU--  U   UC    A   UG   -|  U      C    UAAU 
                   AG GUG  CUUG CCU  UUC AGC GGGUUG GAUG    A
                   UC UAC  GAAC GGA  AAG UCG UCCAAC CUAC    G
CUUUAGAAAUACAACAAUG  U   GU    A   GU   U^  -      A    UAAA 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Star sequence

Rph-Mir-67-v1_5p*
mirBase accessionNone
Sequence 
0- CCUUGUUCAGCUGGGUUGCGAUG -23
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Mature sequence

Rph-Mir-67-v1_3p
mirBase accessionNone
Sequence 
35- UCACAACCUGCUUGAAUGAGGAC -58
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